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BioLiP
Download all results in tab-seperated text for 316 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5vwq:D (1.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 28816437
    202 5vwq:G (1.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 28816437
    203 5vwq:J (1.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 28816437
    204 5wml:A (2.103) BS01 PMP 2.6.1.1
    2.6.1.78
    2.6.1.79    		 GO:0004069 ... Q9SIE1 29405514
    205 5wml:B (2.103) BS01 PMP 2.6.1.1
    2.6.1.78
    2.6.1.79    		 GO:0004069 ... Q9SIE1 29405514
    206 5ykt:A (1.57) BS01 PMP 5.4.3.8 GO:0008483 ... Q9HWU0 29684343
    207 5ykt:B (1.57) BS01 PMP 5.4.3.8 GO:0008483 ... Q9HWU0 29684343
    208 6c4p:A (2.3) BS01 PMP 4.2.1.22 GO:0004122 ... P32582 29630349
    209 6cbk:A (1.75) BS01 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    210 6cbk:A (1.75) BS02 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    211 6cbk:B (1.75) BS01 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    212 6cbk:B (1.75) BS02 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    213 6cbk:C (1.75) BS01 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    214 6cbk:C (1.75) BS02 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    215 6cbk:D (1.75) BS01 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    216 6cbk:D (1.75) BS02 PMP 2.6.1.93
    2.6.1.95    		 GO:0008483 ... Q53U08 29516565
    217 6czy:A (1.75) BS01 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    218 6czy:A (1.75) BS02 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    219 6czy:B (1.75) BS01 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    220 6czy:B (1.75) BS02 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    221 6czy:C (1.75) BS01 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    222 6czy:C (1.75) BS02 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    223 6czy:D (1.75) BS01 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    224 6czy:D (1.75) BS02 PMP 2.6.1.52 GO:0004648 ... Q96255 30034403
    225 6ewr:A (2.4) BS01 PMP ? GO:0000271 ... A0A0H2URM1 29669826
    226 6ewr:B (2.4) BS01 PMP ? GO:0000271 ... A0A0H2URM1 29669826
    227 6ewr:C (2.4) BS01 PMP ? GO:0000271 ... A0A0H2URM1 29669826
    228 6ewr:D (2.4) BS01 PMP ? GO:0000271 ... A0A0H2URM1 29669826
    229 6g4f:A (2.5) BS01 PMP N/A GO:0008483 ... N/A 31162815
    230 6hbv:A (1.65) BS02 PMP 2.6.1.- GO:0005737 ... D2D3B2 N/A
    231 6hbv:A (1.65) BS05 PMP 2.6.1.- GO:0005737 ... D2D3B2 N/A
    232 6hbv:B (1.65) BS02 PMP 2.6.1.- GO:0005737 ... D2D3B2 N/A
    233 6hbv:B (1.65) BS04 PMP 2.6.1.- GO:0005737 ... D2D3B2 N/A
    234 6io1:A (1.803) BS01 PMP ? GO:0005829 ... B9L0K9 31061438
    235 6io1:B (1.803) BS01 PMP ? GO:0005829 ... B9L0K9 31061438
    236 6l1o:B (1.9) BS02 PMP 2.6.1.- GO:0003824 ... P39643 32134000
    237 6q1s:A (2.3) BS01 PMP 2.6.1.21
    4.1.3.38    		 GO:0003824 ... Q79FW0 N/A
    238 6q1s:B (2.3) BS01 PMP 2.6.1.21
    4.1.3.38    		 GO:0003824 ... Q79FW0 N/A
    239 6q1s:C (2.3) BS01 PMP 2.6.1.21
    4.1.3.38    		 GO:0003824 ... Q79FW0 N/A
    240 6q1s:D (2.3) BS01 PMP 2.6.1.21
    4.1.3.38    		 GO:0003824 ... Q79FW0 N/A
    241 6q8e:A (1.5) BS01 PMP 2.6.1.42 GO:0003824 ... D1CCW1 30599183
    242 6rv0:A (2.7) BS01 PMP 2.6.1.44
    2.6.1.51    		 GO:0004760 ... P21549 31794008
    243 6s4g:A (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    244 6s4g:A (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    245 6s4g:B (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    246 6s4g:B (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    247 6s4g:C (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    248 6s4g:C (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    249 6s4g:D (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    250 6s4g:D (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    251 6sse:A (1.56) BS01 PMP N/A GO:0008483 ... N/A 31730149
    252 6sse:B (1.56) BS01 PMP N/A GO:0008483 ... N/A 31730149
    253 6tor:A (2.05) BS01 PMP 4.2.3.2 GO:0005515 ... Q8TBG4 32254049
    254 6tor:B (2.05) BS01 PMP 4.2.3.2 GO:0005515 ... Q8TBG4 32254049
    255 6u7a:B (2.22) BS02 PMP 2.6.1.1 GO:0004069 ... O69689 32327655
    256 6u7a:C (2.22) BS02 PMP 2.6.1.1 GO:0004069 ... O69689 32327655
    257 6u7a:D (2.22) BS02 PMP 2.6.1.1 GO:0004069 ... O69689 32327655
    258 6u7a:G (2.22) BS02 PMP 2.6.1.1 GO:0004069 ... O69689 32327655
    259 6wnn:A (2.59) BS02 PMP 2.6.1.105 GO:0003824 ... P53555 N/A
    260 6wnn:B (2.59) BS02 PMP 2.6.1.105 GO:0003824 ... P53555 N/A
    261 6ymd:A (1.25) BS01 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    262 6ymd:A (1.25) BS04 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    263 6ymd:B (1.25) BS01 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    264 6ymd:B (1.25) BS04 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    265 7b4j:A (1.9) BS01 PMP ? GO:0003867 ... A0A2W0F5X5 34504735
    266 7b4j:A (1.9) BS02 PMP ? GO:0003867 ... A0A2W0F5X5 34504735
    267 7b4j:B (1.9) BS01 PMP ? GO:0003867 ... A0A2W0F5X5 34504735
    268 7b4j:B (1.9) BS02 PMP ? GO:0003867 ... A0A2W0F5X5 34504735
    269 7ceo:A (2.43) BS01 PMP 2.8.1.7 GO:0003824 ... O32164 35395703
    270 7e6b:A (1.84) BS01 PMP 2.8.1.7 GO:0003824 ... O32164 35395703
    271 7e6e:A (2.28) BS01 PMP 2.8.1.7 GO:0003824 ... O32164 35395703
    272 7e6f:A (2.74) BS01 PMP 2.8.1.7 GO:0003824 ... O32164 35395703
    273 7kz6:A (1.65) BS01 PMP 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    274 7kz6:B (1.65) BS01 PMP 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    275 7kz6:C (1.65) BS01 PMP 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    276 7kz6:D (1.65) BS01 PMP 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    277 7l7x:AAA (1.3) BS01 PMP ? GO:0000271 ... Q1QD32 33639157
    278 7l7x:BBB (1.3) BS02 PMP ? GO:0000271 ... Q1QD32 33639157
    279 7mfo:A (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    280 7mfo:B (1.7) BS02 PMP ? GO:0000271 ... Q5UPL1 34076307
    281 7mfo:C (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    282 7mfo:D (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307
    283 7mfo:E (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    284 7mfo:F (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307
    285 7mfo:G (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    286 7mfo:H (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307
    287 7mfo:I (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    288 7mfo:J (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307
    289 7qzj:A (1.55) BS01 PMP ? GO:0004015 ... S3AT34 37005433
    290 7qzj:A (1.55) BS02 PMP ? GO:0004015 ... S3AT34 37005433
    291 7qzj:B (1.55) BS01 PMP ? GO:0004015 ... S3AT34 37005433
    292 7qzj:B (1.55) BS02 PMP ? GO:0004015 ... S3AT34 37005433
    293 7tur:B (1.7) BS02 PMP 2.6.1.1
    2.6.1.3    		 GO:0004069 ... P00503 36128223
    294 7uky:A () BS01 PMP N/A N/A N/A N/A
    295 7uky:B () BS01 PMP N/A N/A N/A N/A
    296 8a5v:A (2.46) BS01 PMP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    297 8a5v:B (2.46) BS01 PMP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    298 8a5v:G (2.46) BS01 PMP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    299 8a5v:H (2.46) BS01 PMP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    300 8a5w:A (2.78) BS03 PMP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    301 8a5w:B (2.78) BS03 PMP 2.6.1.52 GO:0004648 ... Q9Y617 36851825
    302 8aie:A (1.9) BS02 PMP ? GO:0003824 ... D5EHC5 N/A
    303 8aie:B (1.9) BS02 PMP ? GO:0003824 ... D5EHC5 N/A
    304 8ayk:A (1.9) BS02 PMP ? GO:0003824 ... D5EHC5 36903355
    305 8ayk:B (1.9) BS02 PMP ? GO:0003824 ... D5EHC5 36903355
    306 8onm:A (1.85) BS01 PMP ? GO:0003824 ... D5EHC5 N/A
    307 8onm:B (1.85) BS02 PMP ? GO:0003824 ... D5EHC5 N/A
    308 8pnx:A (1.8) BS01 PMP N/A GO:0005829 ... H6RQF3 N/A
    309 8tn3:A (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    310 8tn3:B (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    311 8vr5:A (2.2) BS01 PMP ? GO:0000271 ... Q1QD52 N/A
    312 9aat:A (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    313 9aat:B (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    314 9au3:A (1.35) BS01 PMP N/A N/A Q70KE6 39207862
    315 9aue:A (1.46) BS01 PMP N/A N/A Q70KE6 39207862
    316 9b0c:A (1.66) BS02 PMP N/A N/A Q70KE6 39207862
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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