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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1beu:B (1.9) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 9692955
    2 1kfe:B (1.75) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    3 1kfj:B (1.8) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    4 2cll:B (1.6) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 17559232
    5 2clm:B (1.51) BS02 PLS 4.2.1.20 GO:0000162 ... P0A2K1 17559232
    6 2clo:B (1.5) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 17559232
    7 2trs:B (2.04) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 9201907
    8 2tsy:B (2.5) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 9201907
    9 2w8j:A (1.5) BS01 PLS 2.3.1.50 GO:0005737 ... Q93UV0 19376777 PDBbind: -logKd/Ki=2.96, Kd=1.1mM
    10 2w8w:A (2.14) BS01 PLS 2.3.1.50 GO:0005737 ... Q93UV0 19376777 PDBbind: -logKd/Ki=2.12, Kd=7.5mM
    11 3b1d:A (1.66) BS02 PLS 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    12 3b1d:B (1.66) BS01 PLS 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    13 3b1d:C (1.66) BS02 PLS 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    14 3b1d:D (1.66) BS01 PLS 4.4.1.13 GO:0003824 ... A6BMJ3 22674431
    15 5dw0:A (2.01) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 26553994
    16 5dw0:B (2.01) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 26553994
    17 5dw0:C (2.01) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 26553994
    18 5dw0:D (2.01) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 26553994
    19 5vm5:A (1.67) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    20 5vm5:B (1.67) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    21 5vm5:C (1.67) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    22 6am9:A (2.09) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    23 6amh:A (1.63) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    24 6amh:B (1.63) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    25 6amh:C (1.63) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    26 6amh:D (1.63) BS01 PLS 4.2.1.20 GO:0000162 ... Q8U093 29712420
    27 6cd1:A (1.91) BS01 PLS 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    28 6cd1:B (1.91) BS01 PLS 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    29 6cd1:C (1.91) BS01 PLS 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    30 6cd1:D (1.91) BS01 PLS 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    31 6smn:A (1.63) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    32 6smn:A (1.63) BS03 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    33 6smn:B (1.63) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    34 6smn:B (1.63) BS02 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    35 6smn:C (1.63) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    36 6smn:D (1.63) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    37 6smr:A (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    38 6smr:A (2.12) BS03 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    39 6smr:B (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    40 6smr:B (2.12) BS04 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    41 6smr:C (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    42 6smr:C (2.12) BS02 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    43 6smr:D (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    44 6smr:D (2.12) BS02 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    45 6smw:A (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    46 6smw:A (1.54) BS02 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    47 6smw:B (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    48 6smw:B (1.54) BS03 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    49 6smw:C (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    50 6smw:D (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    51 6ymf:A (1.63) BS01 PLS 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    52 7cqi:S (3.2) BS01 PLS 2.3.1.50 GO:0004758 ... O15269 33558762
    53 7cqi:T (3.2) BS01 PLS 2.3.1.50 GO:0004758 ... O15270 33558762
    54 7cqk:T (3.3) BS01 PLS 2.3.1.50 GO:0004758 ... O15270 33558762
    55 7x5n:A (1.9) BS02 PLS 2.1.2.1 GO:0003824 ... I3U4H4 35739195
    56 7x5n:A (1.9) BS04 PLS 2.1.2.1 GO:0003824 ... I3U4H4 35739195
    57 7x5n:B (1.9) BS02 PLS 2.1.2.1 GO:0003824 ... I3U4H4 35739195
    58 7x5n:B (1.9) BS04 PLS 2.1.2.1 GO:0003824 ... I3U4H4 35739195
    59 7xoy:A (4.25) BS01 PLS 4.2.1.22 GO:0004122 ... P9WP51 35749503
    60 7xoy:B (4.25) BS01 PLS 4.2.1.22 GO:0004122 ... P9WP51 35749503
    61 7xoy:C (4.25) BS01 PLS 4.2.1.22 GO:0004122 ... P9WP51 35749503
    62 7xoy:D (4.25) BS01 PLS 4.2.1.22 GO:0004122 ... P9WP51 35749503
    63 7yjo:A (2.8) BS01 PLS 2.3.1.50 GO:0009058 ... Q94IB8 36989369
    64 7yjo:B (2.8) BS01 PLS 2.3.1.50 GO:0004758 ... Q9LSZ9 36989369
    65 8b05:B (2.1) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 37185266
    66 8b08:B (2.5) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 37185266
    67 8h1q:A (1.5) BS01 PLS 2.3.1.50 GO:0004758 ... A7BFV6 37030501
    68 8iyp:A (1.651) BS01 PLS 2.3.1.50 GO:0004758 ... A7BFV6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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