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BioLiP
Download all results in tab-seperated text for 3547 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 8iak:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    3402 8iak:E (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8    		 38285738
    3403 8iak:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    3404 8iam:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    3405 8iam:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    3406 8irk:A (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3407 8irk:B (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3408 8irk:C (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3409 8irk:D (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3410 8iry:A (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3411 8iry:B (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3412 8iry:C (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3413 8iry:D (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3414 8irz:A (2.86) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3415 8irz:B (2.86) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3416 8is0:A (3.02) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3417 8is0:B (3.02) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    3418 8jg7:A (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    3419 8jg7:C (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    3420 8jg7:D (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    3421 8jg7:E (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    3422 8jij:A (2.5) BS01 PLP ? N/A A0A4S4ESS1 N/A
    3423 8jik:A (2.6) BS01 PLP ? N/A A0A4S4ESS1 N/A
    3424 8jui:A (2.2) BS01 PLP N/A GO:0003824 ... Q818J6 N/A
    3425 8juj:A (1.99) BS01 PLP N/A GO:0003824 ... Q816F3 N/A
    3426 8juj:B (1.99) BS01 PLP N/A GO:0003824 ... Q816F3 N/A
    3427 8juj:B (1.99) BS02 PLP N/A GO:0003824 ... Q816F3 N/A
    3428 8odq:B (1.65) BS01 PLP 2.8.1.7 GO:0005515 ... P9WQ69 37238602
    3429 8odq:D (1.65) BS01 PLP 2.8.1.7 GO:0005515 ... P9WQ69 37238602
    3430 8onj:A (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    3431 8onj:B (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    3432 8onl:A (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    3433 8onl:B (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    3434 8or9:A (1.9) BS01 PLP 4.1.1.28 GO:0001822 ... P20711 37466248
    3435 8ora:A (2.4) BS01 PLP 4.1.1.28 GO:0001822 ... P20711 37466248
    3436 8ovh:A (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    3437 8ovh:B (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    3438 8ovh:C (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    3439 8ovh:D (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    3440 8p90:A (2.8) BS07 PLP N/A GO:0000139 ... Q6IQ20 N/A
    3441 8p90:B (2.8) BS01 PLP N/A GO:0000139 ... Q6IQ20 N/A
    3442 8pk8:A (2.49) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    3443 8pk9:A (2.58) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    3444 8pka:A (2.75) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 38627381
    3445 8pnw:A (1.7) BS01 PLP ? GO:0003824 ... H6RQF3 38003383
    3446 8qof:B (3.3) BS01 PLP N/A N/A P25045 39167489
    3447 8qof:C (3.3) BS02 PLP N/A N/A P40970 39167489
    3448 8qof:F (3.3) BS01 PLP N/A N/A P25045 39167489
    3449 8qof:G (3.3) BS02 PLP N/A N/A P40970 39167489
    3450 8qog:B (3.1) BS01 PLP N/A N/A P25045 39167489
    3451 8qog:C (3.1) BS02 PLP N/A N/A P40970 39167489
    3452 8qwa:A (1.85) BS02 PLP N/A N/A P56137 39149761
    3453 8qyt:A (1.69) BS02 PLP 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    3454 8raf:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 38649133
    3455 8s5l:B (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    3456 8s5l:C (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    3457 8sa7:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3458 8sa7:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3459 8sa8:A (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3460 8sa8:A (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3461 8sa8:B (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3462 8sa8:B (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3463 8sa8:C (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3464 8sa8:C (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3465 8sa8:D (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3466 8sa8:D (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3467 8sa9:A (1.1) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3468 8sa9:B (1.1) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3469 8saa:A (1.45) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3470 8saa:B (1.45) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3471 8sab:A (1.6) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3472 8sab:B (1.6) BS04 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3473 8sac:A (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3474 8sac:A (1.8) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3475 8sac:B (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3476 8sac:B (1.8) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3477 8sac:C (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3478 8sac:C (1.8) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3479 8sac:D (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3480 8sac:D (1.8) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3481 8sad:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3482 8sad:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3483 8sae:A (1.5) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3484 8sae:B (1.5) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3485 8sbg:A (1.94) BS01 PLP 4.1.99.1 GO:0006520 ... A0A3E5GM45 37633277
    3486 8sij:A (2.6) BS01 PLP N/A GO:0006520 ... N/A 37633277
    3487 8skr:A (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    3488 8skr:C (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    3489 8sng:A (1.55) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3490 8sng:B (1.55) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3491 8snj:A (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3492 8snj:B (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3493 8snj:C (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3494 8snj:D (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3495 8snj:E (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3496 8snj:F (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3497 8stw:A (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    3498 8stw:B (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    3499 8stw:C (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    3500 8stw:D (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    3501 8stw:E (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    3502 8stw:F (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    3503 8su6:A (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3504 8su6:B (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    3505 8t0q:C (3.06) BS01 PLP N/A N/A Q8RBT3 N/A
    3506 8t0q:D (3.06) BS01 PLP N/A N/A Q8RBT3 N/A
    3507 8tvt:A (2.0) BS01 PLP N/A N/A Q9Y697 N/A
    3508 8u98:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3509 8u98:A (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3510 8u98:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3511 8u98:B (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3512 8u98:C (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3513 8u98:C (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3514 8u98:D (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3515 8u98:D (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3516 8u99:A (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3517 8u99:B (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    3518 8vhh:A (2.15) BS01 PLP N/A N/A P50909 39074291
    3519 8vhh:B (2.15) BS01 PLP N/A N/A P50909 39074291
    3520 8wkj:A (1.7) BS01 PLP 2.6.1.- GO:0003824 ... A0A130QXX8 37984176
    3521 8wqj:A (2.14) BS01 PLP N/A N/A A0A0P1EM06 N/A
    3522 8wqj:A (2.14) BS02 PLP N/A N/A A0A0P1EM06 N/A
    3523 8wqj:B (2.14) BS01 PLP N/A N/A A0A0P1EM06 N/A
    3524 8wqj:B (2.14) BS02 PLP N/A N/A A0A0P1EM06 N/A
    3525 8x1f:A (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    3526 8x1f:B (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    3527 8xha:A (2.27) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3528 8xha:B (2.27) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3529 8xhd:A (2.7) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3530 8xhd:B (2.7) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3531 8xhk:A (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3532 8xhk:A (2.79) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3533 8xhk:B (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3534 8xhk:C (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3535 8xhk:C (2.79) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3536 8xhk:E (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    3537 8xiy:A (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    3538 8xiy:B (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    3539 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 N/A
    3540 9aza:A (2.84) BS01 PLP N/A GO:0008483 ... A0A0A2J6G6 39001849
    3541 9azb:A (2.9) BS01 PLP N/A GO:0008483 ... A0A0A2J6G6 39001849
    3542 9gpb:A (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    3543 9gpb:B (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    3544 9gpb:C (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    3545 9gpb:D (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    3546 9j0u:A (2.58) BS01 PLP N/A N/A K0NPP0 N/A
    3547 9j0v:A (1.79) BS01 PLP N/A N/A K0NPP0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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