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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ajs:A (1.6) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0003824 ... P00503 9211866
    2 1ajs:B (1.6) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0003824 ... P00503 9211866
    3 1ama:A (2.3) BS01 PLA 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1522585
    4 1asl:A (2.6) BS01 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    5 1asl:A (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    6 1asl:B (2.6) BS01 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    7 1asl:B (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    8 1izl:D (3.7) BS04 PLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    9 1izl:N (3.7) BS05 PLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    10 1tas:A (2.8) BS01 PLA 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 8120903
    11 1tas:A (2.8) BS02 PLA 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 8120903
    12 1tas:B (2.8) BS01 PLA 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 8120903
    13 1tas:B (2.8) BS02 PLA 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 8120903
    14 5vjz:A (2.0) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0004069 ... P00503 29038582
    15 5vjz:B (2.0) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0004069 ... P00503 29038582
    16 7tur:A (1.7) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0004069 ... P00503 36128223
    17 7tur:B (1.7) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0004069 ... P00503 36128223
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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