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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2jj1:B (2.7) BS03 PIT 3.6.1.34 GO:0005515 ... P19483 17698806
    2 2jj1:F (2.7) BS02 PIT 7.1.2.2 GO:0005515 ... P00829 17698806
    3 2jj1:G (2.7) BS01 PIT 3.6.1.34 GO:0005515 ... P05631 17698806
    4 2jj1:I (2.7) BS03 PIT 3.6.1.34 GO:0005515 ... P19483 17698806
    5 2jj1:M (2.7) BS02 PIT 7.1.2.2 GO:0005515 ... P00829 17698806
    6 2jj1:N (2.7) BS01 PIT 3.6.1.34 GO:0005515 ... P05631 17698806
    7 4hd8:A (2.3) BS03 PIT 2.3.1.286 GO:0017136 ... Q9NTG7 23185430
    8 5u97:A (1.85) BS02 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    9 5u97:A (1.85) BS03 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    10 5u97:A (1.85) BS04 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    11 5u97:B (1.85) BS02 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    12 5u97:B (1.85) BS03 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    13 5u97:C (1.85) BS02 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    14 5u97:C (1.85) BS03 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    15 5u97:D (1.85) BS02 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    16 5u97:D (1.85) BS03 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    17 5u97:D (1.85) BS04 PIT 1.13.11.- GO:0010436 ... Q7S860 28493664
    18 7ccv:A (1.753) BS01 PIT 2.7.11.1 GO:0004672 ... P53355 N/A
    19 8fu2:A (1.9) BS02 PIT N/A N/A N/A N/A
    20 8fu2:A (1.9) BS03 PIT N/A N/A N/A N/A
    21 8fu2:B (1.9) BS02 PIT N/A N/A N/A N/A
    22 8fu2:B (1.9) BS03 PIT N/A N/A N/A N/A
    23 8fu2:C (1.9) BS02 PIT N/A N/A N/A N/A
    24 8fu2:C (1.9) BS03 PIT N/A N/A N/A N/A
    25 8fu2:D (1.9) BS02 PIT N/A N/A N/A N/A
    26 8fu2:D (1.9) BS03 PIT N/A N/A N/A N/A
    27 8fu2:D (1.9) BS04 PIT N/A N/A N/A N/A
    28 8fu5:A (2.01) BS02 PIT N/A N/A N/A N/A
    29 8fu5:B (2.01) BS02 PIT N/A N/A N/A N/A
    30 8fu5:C (2.01) BS02 PIT N/A N/A N/A N/A
    31 8fu5:D (2.01) BS02 PIT N/A N/A N/A N/A
    32 8srl:A (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    33 8srl:B (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    34 8srl:C (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    35 8srl:D (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    36 8w43:A (1.302) BS01 PIT ? N/A P02766 37910439
    37 8w43:B (1.302) BS01 PIT ? N/A P02766 37910439
    38 8w48:A (1.19) BS01 PIT ? N/A P02766 37910439
    39 8w48:B (1.19) BS01 PIT ? N/A P02766 37910439
    40 8wrk:A (2.03) BS01 PIT 2.4.1.- GO:0008194 ... W8JMV4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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