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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cml:A (1.69) BS02 PIN 2.3.1.74 GO:0009058 ... P30074 10426957
    2 1ecf:A (2.0) BS01 PIN 2.4.2.14 GO:0000287 ... P0AG16 9514258
    3 1ecf:A (2.0) BS02 PIN 2.4.2.14 GO:0000287 ... P0AG16 9514258
    4 1ecf:A (2.0) BS03 PIN 2.4.2.14 GO:0000287 ... P0AG16 9514258
    5 1ecf:B (2.0) BS01 PIN 2.4.2.14 GO:0000287 ... P0AG16 9514258
    6 1ecf:B (2.0) BS02 PIN 2.4.2.14 GO:0000287 ... P0AG16 9514258
    7 1ecf:B (2.0) BS03 PIN 2.4.2.14 GO:0000287 ... P0AG16 9514258
    8 1ecg:A (2.3) BS02 PIN 2.4.2.14 GO:0000287 ... P0AG16 8663035
    9 1ecg:A (2.3) BS03 PIN 2.4.2.14 GO:0000287 ... P0AG16 8663035
    10 1ecg:A (2.3) BS04 PIN 2.4.2.14 GO:0000287 ... P0AG16 8663035
    11 1ecg:B (2.3) BS02 PIN 2.4.2.14 GO:0000287 ... P0AG16 8663035
    12 1ecg:B (2.3) BS03 PIN 2.4.2.14 GO:0000287 ... P0AG16 8663035
    13 1ecg:B (2.3) BS04 PIN 2.4.2.14 GO:0000287 ... P0AG16 8663035
    14 1jof:B (2.5) BS01 PIN 5.5.1.5 GO:0016853 ... P38677 11937053
    15 1jof:H (2.5) BS01 PIN 5.5.1.5 GO:0016853 ... P38677 11937053
    16 1t5c:A (2.5) BS02 PIN ? GO:0003777 ... Q02224 15236970
    17 2g06:A (2.25) BS02 PIN 3.1.3.5
    3.1.3.91    		 GO:0000287 ... Q9D020 16672222
    18 2g06:B (2.25) BS02 PIN 3.1.3.5
    3.1.3.91    		 GO:0000287 ... Q9D020 16672222
    19 2g09:A (2.1) BS03 PIN 3.1.3.5
    3.1.3.91    		 GO:0000287 ... Q9D020 16672222
    20 2g09:B (2.1) BS03 PIN 3.1.3.5
    3.1.3.91    		 GO:0000287 ... Q9D020 16672222
    21 4dxg:A (2.5) BS04 PIN ? GO:0005576 ... A0A0H3K6A3 22949551
    22 4ftw:A (2.3) BS01 PIN 3.1.1.1 GO:0016787 ... Q3J2V1 22987200
    23 5aec:A (1.93) BS01 PIN 1.14.14.155 GO:0004497 ... D7UER1 26527149
    24 5aec:B (1.93) BS01 PIN 1.14.14.155 GO:0004497 ... D7UER1 26527149
    25 5cs5:B (1.9) BS01 PIN ? N/A P14210 30090230 PDBbind: -logKd/Ki=1.58, Kd=26.6mM
    26 5jk5:A (2.071) BS02 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    27 5jk5:B (2.071) BS02 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    28 5jk6:A (2.072) BS01 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    29 5jk6:A (2.072) BS03 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    30 5jk6:B (2.072) BS01 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    31 5jk6:B (2.072) BS02 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    32 5jk8:A (2.394) BS01 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    33 5jk8:A (2.394) BS05 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    34 5jk8:B (2.394) BS01 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    35 5jk8:B (2.394) BS02 PIN 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    36 5ofk:A (1.16) BS05 PIN ? GO:0004553 ... B9MKT7 28974575
    37 7kd5:A (1.551) BS03 PIN ? GO:0008643 ... A0A4P1LXE0
    Q91MK1    		 34578318
    38 7kd5:A (1.551) BS04 PIN ? GO:0008643 ... A0A4P1LXE0
    Q91MK1    		 34578318
    39 7kd5:A (1.551) BS05 PIN ? GO:0008643 ... A0A4P1LXE0
    Q91MK1    		 34578318
    40 8oi9:A (1.95) BS03 PIN ? GO:0005829 ... A2FTT0 37482279
    41 8ovr:A (1.6) BS01 PIN ? GO:0005975 ... F8UNI4 N/A
    42 8uyn:C (2.0) BS01 PIN N/A N/A P80188 39009580
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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