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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e9x:A (2.1) BS02 PIM 1.14.15.36 GO:0004497 ... P9WPP9 11248033
    2 1f4t:A (1.93) BS03 PIM 1.11.1.7
    1.14.-.-    		 GO:0004497 ... Q55080 10859321
    3 1f4t:B (1.93) BS03 PIM 1.11.1.7
    1.14.-.-    		 GO:0004497 ... Q55080 10859321
    4 1odo:A (1.85) BS02 PIM ? GO:0004497 ... Q9KZR7 14691240
    5 1phf:A (1.6) BS02 PIM 1.14.15.1 GO:0004497 ... P00183 3442650
    6 1s1f:A (1.5) BS02 PIM 1.14.19.69 GO:0004497 ... Q9FCA6 15659395
    7 2d0t:A (2.3) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 16477023 BindingDB: IC50=48000nM
    8 2d0t:B (2.3) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 16477023 BindingDB: IC50=48000nM
    9 2rfc:A (3.1) BS02 PIM 1.14.14.1 GO:0004497 ... Q6KZ68 18197710
    10 2rfc:B (3.1) BS02 PIM 1.14.14.1 GO:0004497 ... Q6KZ68 18197710
    11 2rfc:C (3.1) BS02 PIM 1.14.14.1 GO:0004497 ... Q6KZ68 18197710
    12 2rfc:D (3.1) BS02 PIM 1.14.14.1 GO:0004497 ... Q6KZ68 18197710
    13 3e5k:A (2.6) BS02 PIM ? GO:0004497 ... Q93H81 19074393
    14 4u72:A (2.0) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    15 4u72:B (2.0) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    16 4u74:A (2.31) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    17 4u74:B (2.31) BS02 PIM 1.13.11.52 GO:0002376 ... P14902 N/A BindingDB: IC50=48000nM
    18 5bv5:B (2.7) BS02 PIM 1.11.1.7
    1.14.-.-    		 GO:0004497 ... Q55080 26299431
    19 7orr:A (1.79) BS03 PIM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 35128408
    20 7orr:A (1.79) BS04 PIM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 35128408
    21 8a21:A (2.18) BS02 PIM 3.1.3.3 GO:0000287 ... A0QJI1 36403421
    22 8a21:A (2.18) BS03 PIM 3.1.3.3 GO:0000287 ... A0QJI1 36403421
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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