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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 198 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ppr:M (2.0) BS03 PID ? GO:0016168 ... P80484 8650577
    2 1ppr:M (2.0) BS04 PID ? GO:0016168 ... P80484 8650577
    3 1ppr:M (2.0) BS05 PID ? GO:0016168 ... P80484 8650577
    4 1ppr:M (2.0) BS06 PID ? GO:0016168 ... P80484 8650577
    5 1ppr:M (2.0) BS07 PID ? GO:0016168 ... P80484 8650577
    6 1ppr:M (2.0) BS08 PID ? GO:0016168 ... P80484 8650577
    7 1ppr:M (2.0) BS09 PID ? GO:0016168 ... P80484 8650577
    8 1ppr:M (2.0) BS10 PID ? GO:0016168 ... P80484 8650577
    9 1ppr:N (2.0) BS03 PID ? GO:0016168 ... P80484 8650577
    10 1ppr:N (2.0) BS04 PID ? GO:0016168 ... P80484 8650577
    11 1ppr:N (2.0) BS05 PID ? GO:0016168 ... P80484 8650577
    12 1ppr:N (2.0) BS06 PID ? GO:0016168 ... P80484 8650577
    13 1ppr:N (2.0) BS07 PID ? GO:0016168 ... P80484 8650577
    14 1ppr:N (2.0) BS08 PID ? GO:0016168 ... P80484 8650577
    15 1ppr:N (2.0) BS09 PID ? GO:0016168 ... P80484 8650577
    16 1ppr:N (2.0) BS10 PID ? GO:0016168 ... P80484 8650577
    17 1ppr:O (2.0) BS03 PID ? GO:0016168 ... P80484 8650577
    18 1ppr:O (2.0) BS04 PID ? GO:0016168 ... P80484 8650577
    19 1ppr:O (2.0) BS05 PID ? GO:0016168 ... P80484 8650577
    20 1ppr:O (2.0) BS06 PID ? GO:0016168 ... P80484 8650577
    21 1ppr:O (2.0) BS07 PID ? GO:0016168 ... P80484 8650577
    22 1ppr:O (2.0) BS08 PID ? GO:0016168 ... P80484 8650577
    23 1ppr:O (2.0) BS09 PID ? GO:0016168 ... P80484 8650577
    24 1ppr:O (2.0) BS10 PID ? GO:0016168 ... P80484 8650577
    25 2c9e:A (2.1) BS03 PID ? GO:0016168 ... O76183 19371099
    26 2c9e:A (2.1) BS04 PID ? GO:0016168 ... O76183 19371099
    27 2c9e:A (2.1) BS05 PID ? GO:0016168 ... O76183 19371099
    28 2c9e:A (2.1) BS06 PID ? GO:0016168 ... O76183 19371099
    29 2c9e:A (2.1) BS07 PID ? GO:0016168 ... O76183 19371099
    30 2c9e:A (2.1) BS08 PID ? GO:0016168 ... O76183 19371099
    31 2x1z:M (1.8) BS01 PID ? GO:0016168 ... P80484 20102711
    32 2x1z:M (1.8) BS02 PID ? GO:0016168 ... P80484 20102711
    33 2x1z:M (1.8) BS03 PID ? GO:0016168 ... P80484 20102711
    34 2x1z:M (1.8) BS04 PID ? GO:0016168 ... P80484 20102711
    35 2x20:M (1.95) BS02 PID ? GO:0016168 ... P80484 20102711
    36 2x20:M (1.95) BS03 PID ? GO:0016168 ... P80484 20102711
    37 2x20:M (1.95) BS04 PID ? GO:0016168 ... P80484 20102711
    38 2x20:M (1.95) BS05 PID ? GO:0016168 ... P80484 20102711
    39 2x21:M (1.75) BS02 PID ? GO:0016168 ... P80484 20102711
    40 2x21:M (1.75) BS03 PID ? GO:0016168 ... P80484 20102711
    41 2x21:M (1.75) BS04 PID ? GO:0016168 ... P80484 20102711
    42 2x21:M (1.75) BS05 PID ? GO:0016168 ... P80484 20102711
    43 3iis:M (1.4) BS02 PID ? GO:0016168 ... P80484 19934052
    44 3iis:M (1.4) BS03 PID ? GO:0016168 ... P80484 19934052
    45 3iis:M (1.4) BS04 PID ? GO:0016168 ... P80484 19934052
    46 3iis:M (1.4) BS05 PID ? GO:0016168 ... P80484 19934052
    47 3iiu:M (1.45) BS02 PID ? GO:0016168 ... P80484 19934052
    48 3iiu:M (1.45) BS03 PID ? GO:0016168 ... P80484 19934052
    49 3iiu:M (1.45) BS04 PID ? GO:0016168 ... P80484 19934052
    50 3iiu:M (1.45) BS05 PID ? GO:0016168 ... P80484 19934052
    51 8jjr:F (2.8) BS13 PID N/A GO:0009765 ... A0AA36INW6 38493166
    52 8jjr:F (2.8) BS14 PID N/A GO:0009765 ... A0AA36INW6 38493166
    53 8jjr:I (2.8) BS13 PID N/A GO:0009765 ... A0AA36HTH0 38493166
    54 8jjr:J (2.8) BS10 PID N/A GO:0009765 ... A0AA36N2P9 38493166
    55 8jjr:J (2.8) BS12 PID N/A GO:0009765 ... A0AA36N2P9 38493166
    56 8jjr:J (2.8) BS13 PID N/A GO:0009765 ... A0AA36N2P9 38493166
    57 8jjr:K (2.8) BS11 PID N/A GO:0009765 ... A0AA36J0D5 38493166
    58 8jjr:U (2.8) BS07 PID N/A GO:0009765 ... A0AA36JI10 38493166
    59 8jw0:C (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    60 8jw0:C (2.9) BS03 PID N/A GO:0009765 ... N/A 38319970
    61 8jw0:C (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    62 8jw0:C (2.9) BS06 PID N/A GO:0009765 ... N/A 38319970
    63 8jw0:D (2.9) BS02 PID ? GO:0009765 ... Q38689 38319970
    64 8jw0:D (2.9) BS03 PID ? GO:0009765 ... Q38689 38319970
    65 8jw0:D (2.9) BS05 PID ? GO:0009765 ... Q38689 38319970
    66 8jw0:D (2.9) BS06 PID ? GO:0009765 ... Q38689 38319970
    67 8jw0:D (2.9) BS07 PID ? GO:0009765 ... Q38689 38319970
    68 8jw0:E (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    69 8jw0:F (2.9) BS03 PID N/A GO:0009765 ... N/A 38319970
    70 8jw0:F (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    71 8jw0:F (2.9) BS07 PID N/A GO:0009765 ... N/A 38319970
    72 8jw0:G (2.9) BS09 PID N/A GO:0009765 ... N/A 38319970
    73 8jw0:G (2.9) BS10 PID N/A GO:0009765 ... N/A 38319970
    74 8jw0:H (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    75 8jw0:H (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    76 8jw0:H (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    77 8jw0:H (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    78 8jw0:H (2.9) BS06 PID N/A GO:0009765 ... N/A 38319970
    79 8jw0:N (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    80 8jw0:N (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    81 8jw0:N (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    82 8jw0:N (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    83 8jw0:O (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    84 8jw0:O (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    85 8jw0:O (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    86 8jw0:O (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    87 8jw0:O (2.9) BS07 PID N/A GO:0009765 ... N/A 38319970
    88 8jw0:P (2.9) BS02 PID ? GO:0009765 ... Q38688 38319970
    89 8jw0:P (2.9) BS03 PID ? GO:0009765 ... Q38688 38319970
    90 8jw0:P (2.9) BS05 PID ? GO:0009765 ... Q38688 38319970
    91 8jw0:P (2.9) BS06 PID ? GO:0009765 ... Q38688 38319970
    92 8jw0:Q (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    93 8jw0:Q (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    94 8jw0:Q (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    95 8jw0:Q (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    96 8jw0:T (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    97 8jw0:T (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    98 8jw0:T (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    99 8jw0:T (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    100 8jw0:T (2.9) BS07 PID N/A GO:0009765 ... N/A 38319970
    101 8jw0:T (2.9) BS17 PID N/A GO:0009765 ... N/A 38319970
    102 8jw0:h (2.9) BS04 PID N/A N/A N/A 38319970
    103 8jw0:j (2.9) BS04 PID N/A GO:0009522 ... N/A 38319970
    104 8jze:D (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    105 8jze:D (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    106 8jze:D (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    107 8jze:D (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    108 8jze:D (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    109 8jze:F (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    110 8jze:F (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    111 8jze:F (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    112 8jze:F (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    113 8jze:G (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    114 8jze:G (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    115 8jze:H (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    116 8jze:H (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    117 8jze:M (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    118 8jze:N (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    119 8jze:N (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    120 8jze:O (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    121 8jze:O (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    122 8jze:O (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    123 8jze:O (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    124 8jze:O (2.99) BS07 PID N/A GO:0009765 ... N/A 38319970
    125 8jze:P (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    126 8jze:P (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    127 8jze:P (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    128 8jze:P (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    129 8jze:j (2.99) BS05 PID ? GO:0009522 ... A0A812LLR4 38319970
    130 8jzf:D (2.7) BS01 PID N/A GO:0009765 ... N/A 38319970
    131 8jzf:D (2.7) BS02 PID N/A GO:0009765 ... N/A 38319970
    132 8jzf:D (2.7) BS04 PID N/A GO:0009765 ... N/A 38319970
    133 8jzf:D (2.7) BS05 PID N/A GO:0009765 ... N/A 38319970
    134 8jzf:D (2.7) BS06 PID N/A GO:0009765 ... N/A 38319970
    135 8jzf:F (2.7) BS01 PID N/A GO:0009765 ... N/A 38319970
    136 8jzf:F (2.7) BS03 PID N/A GO:0009765 ... N/A 38319970
    137 8jzf:F (2.7) BS04 PID N/A GO:0009765 ... N/A 38319970
    138 8jzf:F (2.7) BS05 PID N/A GO:0009765 ... N/A 38319970
    139 8jzf:G (2.7) BS05 PID N/A GO:0009765 ... N/A 38319970
    140 8jzf:G (2.7) BS06 PID N/A GO:0009765 ... N/A 38319970
    141 8jzf:H (2.7) BS01 PID N/A GO:0009765 ... N/A 38319970
    142 8jzf:H (2.7) BS02 PID N/A GO:0009765 ... N/A 38319970
    143 8jzf:M (2.7) BS01 PID N/A GO:0009765 ... N/A 38319970
    144 8jzf:N (2.7) BS02 PID N/A GO:0009765 ... N/A 38319970
    145 8jzf:N (2.7) BS03 PID N/A GO:0009765 ... N/A 38319970
    146 8jzf:j (2.7) BS05 PID ? GO:0009522 ... A0A812LLR4 38319970
    147 8ov5:M (1.15) BS03 PID ? GO:0016168 ... P80484 N/A
    148 8ov5:M (1.15) BS04 PID ? GO:0016168 ... P80484 N/A
    149 8ov5:M (1.15) BS05 PID ? GO:0016168 ... P80484 N/A
    150 8ov5:M (1.15) BS06 PID ? GO:0016168 ... P80484 N/A
    151 8ov5:M (1.15) BS08 PID ? GO:0016168 ... P80484 N/A
    152 8ov5:M (1.15) BS09 PID ? GO:0016168 ... P80484 N/A
    153 8ov5:M (1.15) BS10 PID ? GO:0016168 ... P80484 N/A
    154 8ov5:M (1.15) BS11 PID ? GO:0016168 ... P80484 N/A
    155 8ov5:N (1.15) BS01 PID ? GO:0016168 ... P80484 N/A
    156 8ov5:N (1.15) BS04 PID ? GO:0016168 ... P80484 N/A
    157 8ov5:N (1.15) BS05 PID ? GO:0016168 ... P80484 N/A
    158 8ov5:N (1.15) BS06 PID ? GO:0016168 ... P80484 N/A
    159 8ov5:N (1.15) BS07 PID ? GO:0016168 ... P80484 N/A
    160 8ov5:N (1.15) BS09 PID ? GO:0016168 ... P80484 N/A
    161 8ov5:N (1.15) BS10 PID ? GO:0016168 ... P80484 N/A
    162 8ov5:N (1.15) BS11 PID ? GO:0016168 ... P80484 N/A
    163 8ov5:N (1.15) BS12 PID ? GO:0016168 ... P80484 N/A
    164 8ov5:O (1.15) BS04 PID ? GO:0016168 ... P80484 N/A
    165 8ov5:O (1.15) BS05 PID ? GO:0016168 ... P80484 N/A
    166 8ov5:O (1.15) BS06 PID ? GO:0016168 ... P80484 N/A
    167 8ov5:O (1.15) BS07 PID ? GO:0016168 ... P80484 N/A
    168 8ov5:O (1.15) BS09 PID ? GO:0016168 ... P80484 N/A
    169 8ov5:O (1.15) BS10 PID ? GO:0016168 ... P80484 N/A
    170 8ov5:O (1.15) BS11 PID ? GO:0016168 ... P80484 N/A
    171 8ov5:O (1.15) BS12 PID ? GO:0016168 ... P80484 N/A
    172 8ow6:A (1.2) BS02 PID ? GO:0016168 ... Q9FEY4 N/A
    173 8ow6:A (1.2) BS03 PID ? GO:0016168 ... Q9FEY4 N/A
    174 8ow6:A (1.2) BS04 PID ? GO:0016168 ... Q9FEY4 N/A
    175 8ow6:A (1.2) BS05 PID ? GO:0016168 ... Q9FEY4 N/A
    176 8ow6:A (1.2) BS07 PID ? GO:0016168 ... Q9FEY4 N/A
    177 8ow6:A (1.2) BS08 PID ? GO:0016168 ... Q9FEY4 N/A
    178 8ow6:B (1.2) BS01 PID N/A GO:0016168 ... Q9FEY4 N/A
    179 8ow6:B (1.2) BS02 PID N/A GO:0016168 ... Q9FEY4 N/A
    180 8ow6:B (1.2) BS03 PID N/A GO:0016168 ... Q9FEY4 N/A
    181 8ow6:B (1.2) BS05 PID N/A GO:0016168 ... Q9FEY4 N/A
    182 8ow6:B (1.2) BS06 PID N/A GO:0016168 ... Q9FEY4 N/A
    183 8ow6:B (1.2) BS07 PID N/A GO:0016168 ... Q9FEY4 N/A
    184 8ow6:B (1.2) BS08 PID N/A GO:0016168 ... Q9FEY4 N/A
    185 8ow6:C (1.2) BS02 PID ? GO:0016168 ... Q9FEY4 N/A
    186 8ow6:C (1.2) BS03 PID ? GO:0016168 ... Q9FEY4 N/A
    187 8ow6:C (1.2) BS04 PID ? GO:0016168 ... Q9FEY4 N/A
    188 8ow6:C (1.2) BS05 PID ? GO:0016168 ... Q9FEY4 N/A
    189 8ow6:C (1.2) BS07 PID ? GO:0016168 ... Q9FEY4 N/A
    190 8ow6:C (1.2) BS08 PID ? GO:0016168 ... Q9FEY4 N/A
    191 8ow6:D (1.2) BS01 PID N/A GO:0016168 ... Q9FEY4 N/A
    192 8ow6:D (1.2) BS02 PID N/A GO:0016168 ... Q9FEY4 N/A
    193 8ow6:D (1.2) BS03 PID N/A GO:0016168 ... Q9FEY4 N/A
    194 8ow6:D (1.2) BS04 PID N/A GO:0016168 ... Q9FEY4 N/A
    195 8ow6:D (1.2) BS06 PID N/A GO:0016168 ... Q9FEY4 N/A
    196 8ow6:D (1.2) BS07 PID N/A GO:0016168 ... Q9FEY4 N/A
    197 8ow6:D (1.2) BS08 PID N/A GO:0016168 ... Q9FEY4 N/A
    198 8ow6:D (1.2) BS09 PID N/A GO:0016168 ... Q9FEY4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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