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BioLiP
Download all results in tab-seperated text for 432 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7oex:A (1.51) BS01 PHE 3.-.-.- GO:0005515 ... O75884 35173328
    402 7oex:B (1.51) BS01 PHE 3.-.-.- GO:0005515 ... O75884 35173328
    403 7qri:A (-1.00) BS01 PHE 1.14.16.4 GO:0004497 ... Q8IWU9 37119821
    404 7qri:B (-1.00) BS01 PHE 1.14.16.4 GO:0004497 ... Q8IWU9 37119821
    405 7r3b:A (2.82) BS01 PHE 2.5.1.6 GO:0000287 ... Q88XB8 35762725
    406 7r3b:H (2.82) BS02 PHE 2.5.1.6 GO:0000287 ... Q88XB8 35762725
    407 8g5z:EF (2.64) BS04 PHE 3.6.5.- GO:0000049 ... P68105 37020024
    408 8g60:EF (2.54) BS03 PHE 3.6.5.- GO:0000049 ... P68104 37020024
    409 8g6j:EF (2.8) BS04 PHE 3.6.5.- GO:0000049 ... P68104 37020024
    410 8ihr:A (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    411 8ihr:B (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    412 8ihr:C (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    413 8ihr:D (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    414 8ihr:E (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    415 8ihr:F (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    416 8ihr:G (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    417 8ihr:H (2.5) BS03 PHE ? GO:0016787 ... A0A0S1B1B6 37331057
    418 8jc3:A (1.82) BS03 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    419 8jc3:A (1.82) BS05 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    420 8jc3:B (1.82) BS03 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    421 8jc3:B (1.82) BS05 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    422 8jc4:A (2.64) BS04 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    423 8jc4:A (2.64) BS06 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    424 8jc4:B (2.64) BS02 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    425 8jc4:B (2.64) BS04 PHE 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    426 8oin:Bv (3.6) BS02 PHE ? GO:0003735 ... F1SRT0 37141370
    427 8oiq:Bv (3.5) BS02 PHE ? GO:0003735 ... F1SRT0 37141370
    428 8p8x:A (1.46) BS01 PHE 6.1.1.20 GO:0000049 ... O95363 37523899
    429 9enk:A (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    430 9enk:B (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    431 9enk:C (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    432 9enk:D (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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