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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aj0:A (2.0) BS01 PH2 2.5.1.15 GO:0004156 ... P0AC13 9187658
    2 1f9h:A (1.5) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 12578370
    3 1hq2:A (1.25) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 12578370
    4 1nbu:A (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    5 1nbu:A (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    6 1nbu:B (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    7 1nbu:B (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    8 1nbu:C (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    9 1nbu:C (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    10 1nbu:D (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    11 1nbu:D (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    12 1nbu:E (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    13 1nbu:E (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    14 1nbu:F (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    15 1nbu:F (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    16 1nbu:G (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    17 1nbu:G (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    18 1nbu:H (1.6) BS01 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    19 1nbu:H (1.6) BS02 PH2 1.13.11.81
    4.1.2.25
    5.1.99.8    		 GO:0004150 ... P9WNC5 15876368
    20 1q0n:A (1.25) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 11080626
    21 1ru1:A (1.4) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 14769023 MOAD: Kd=18uM
    22 1ru1:B (1.4) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 14769023 MOAD: Kd=18uM
    23 2dhn:A (2.2) BS01 PH2 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 9586996
    24 2qx0:A (1.8) BS04 PH2 2.7.6.3 GO:0003848 ... A0A5P8YCA3 18007032 MOAD: Kd=0.78uM
    PDBbind: -logKd/Ki=6.11, Kd=0.78uM
    25 2qx0:B (1.8) BS04 PH2 2.7.6.3 GO:0003848 ... A0A5P8YCA3 18007032 MOAD: Kd=0.78uM
    PDBbind: -logKd/Ki=6.11, Kd=0.78uM
    26 3ilo:A (1.1) BS02 PH2 2.7.6.3 GO:0000287 ... P26281 N/A
    27 3kuh:A (1.35) BS02 PH2 2.7.6.3 GO:0000287 ... P26281 N/A
    28 3mco:A (2.3) BS01 PH2 N/A GO:0003848 ... N/A 21152407
    29 3mco:A (2.3) BS02 PH2 N/A GO:0003848 ... N/A 21152407
    30 3mco:B (2.3) BS01 PH2 N/A GO:0003848 ... N/A 21152407
    31 3mco:B (2.3) BS02 PH2 N/A GO:0003848 ... N/A 21152407
    32 6jwr:A (2.6) BS04 PH2 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    33 6jwu:A (2.65) BS02 PH2 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    34 6jwv:A (2.7) BS02 PH2 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    35 6jww:A (2.75) BS02 PH2 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    36 6jwx:A (2.5) BS02 PH2 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    37 6jwy:A (2.5) BS02 PH2 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    38 7su7:A (2.09) BS01 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    39 7su7:A (2.09) BS02 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    40 7su7:B (2.09) BS01 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    41 7su7:B (2.09) BS02 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    42 7su7:C (2.09) BS01 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    43 7su7:C (2.09) BS02 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    44 7su7:D (2.09) BS01 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    45 7su7:D (2.09) BS02 PH2 4.1.2.25 GO:0004150 ... Q8CZR7 N/A
    46 7su8:A (2.65) BS02 PH2 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    47 7su8:B (2.65) BS02 PH2 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    48 8sv5:A (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    49 8sv5:A (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    50 8sv5:B (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    51 8sv5:B (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    52 8sv5:C (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    53 8sv5:C (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    54 8sv5:D (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    55 8sv5:D (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    56 8sv5:E (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    57 8sv5:E (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    58 8sv5:F (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    59 8sv5:F (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    60 8sv5:G (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    61 8sv5:G (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    62 8sv5:H (2.16) BS01 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    63 8sv5:H (2.16) BS02 PH2 4.1.2.25 GO:0004150 ... A0A6L7HSV1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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