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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2r9r:B (2.4) BS01 PGW N/A GO:0005216 ... N/A 18004376
    2 2r9r:B (2.4) BS02 PGW N/A GO:0005216 ... N/A 18004376
    3 2r9r:B (2.4) BS03 PGW N/A GO:0005216 ... N/A 18004376
    4 2r9r:B (2.4) BS04 PGW N/A GO:0005216 ... N/A 18004376
    5 2r9r:H (2.4) BS01 PGW N/A GO:0005216 ... N/A 18004376
    6 3lnm:B (2.9) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 20360102
    7 3lnm:B (2.9) BS02 PGW ? GO:0005216 ... P15387
    P63142    		 20360102
    8 3lnm:B (2.9) BS03 PGW ? GO:0005216 ... P15387
    P63142    		 20360102
    9 3lnm:B (2.9) BS04 PGW ? GO:0005216 ... P15387
    P63142    		 20360102
    10 3lnm:D (2.9) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 20360102
    11 3wmm:M (3.008) BS09 PGW ? GO:0005515 ... A8ASG6 24670637
    12 4jta:B (2.5) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    13 4jta:B (2.5) BS02 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    14 4jta:B (2.5) BS03 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    15 4jta:B (2.5) BS04 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    16 4jta:Q (2.5) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    17 4jtc:B (2.56) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    18 4jtc:B (2.56) BS02 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    19 4jtc:B (2.56) BS03 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    20 4jtc:H (2.56) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    21 4jtd:B (2.54) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    22 4jtd:B (2.54) BS02 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    23 4jtd:H (2.54) BS01 PGW ? GO:0005216 ... P15387
    P63142    		 23705070
    24 4k5y:B (2.977) BS02 PGW ?
    3.2.1.17    		 GO:0003796 ... P00720
    P34998    		 23863939
    25 4k5y:B (2.977) BS03 PGW ?
    3.2.1.17    		 GO:0003796 ... P00720
    P34998    		 23863939
    26 4k5y:B (2.977) BS04 PGW ?
    3.2.1.17    		 GO:0003796 ... P00720
    P34998    		 23863939
    27 5b5m:AE (3.3) BS02 PGW ? GO:0005515 ... D2Z0P2 27933779
    28 5b5m:M (3.3) BS09 PGW ? GO:0005515 ... A8ASG6 27933779
    29 5b5m:S (3.3) BS02 PGW ? GO:0005515 ... D2Z0P2 27933779
    30 5b5n:AE (3.3) BS02 PGW ? GO:0005515 ... D2Z0P2 27933779
    31 5b5n:M (3.3) BS10 PGW ? GO:0005515 ... A8ASG6 27933779
    32 5b5n:S (3.3) BS02 PGW ? GO:0005515 ... D2Z0P2 27933779
    33 5bkj:A (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    34 5bkj:C (3.5) BS02 PGW ? GO:0005886 ... O27564 37653172
    35 5bkj:E (3.5) BS02 PGW ? GO:0005886 ... O27564 37653172
    36 5bkj:G (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    37 5bkk:A (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    38 5bkk:C (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    39 5tj6:A (3.5) BS03 PGW ? GO:0005216 ... Q5QJC5 27974795
    40 5wie:B (3.3) BS01 PGW ? GO:0005216 ... P63142 28846092
    41 5wie:B (3.3) BS02 PGW ? GO:0005216 ... P63142 28846092
    42 5wie:H (3.3) BS01 PGW ? GO:0005216 ... P63142 28846092
    43 6bw5:A (3.1) BS02 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    44 6bw5:A (3.1) BS03 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    45 6bw5:B (3.1) BS01 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    46 6bw5:B (3.1) BS03 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    47 6bw5:C (3.1) BS02 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    48 6bw5:C (3.1) BS03 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    49 6bw5:D (3.1) BS01 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    50 6bw5:D (3.1) BS03 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    51 6bw6:A (2.95) BS02 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    52 6bw6:A (2.95) BS03 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    53 6bw6:B (2.95) BS01 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    54 6bw6:B (2.95) BS02 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    55 6bw6:C (2.95) BS02 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    56 6bw6:C (2.95) BS03 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    57 6bw6:D (2.95) BS01 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    58 6bw6:D (2.95) BS02 PGW 2.7.8.15 GO:0003975 ... Q9H3H5 29459785
    59 6cjq:A (3.42) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    60 6cjq:A (3.42) BS02 PGW ? GO:0005221 ... G0GA88 30028291
    61 6cjq:A (3.42) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    62 6cjq:A (3.42) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    63 6cjq:B (3.42) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    64 6cjq:B (3.42) BS02 PGW ? GO:0005221 ... G0GA88 30028291
    65 6cjq:B (3.42) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    66 6cjq:B (3.42) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    67 6cjq:C (3.42) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    68 6cjq:C (3.42) BS02 PGW ? GO:0005221 ... G0GA88 30028291
    69 6cjq:C (3.42) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    70 6cjq:C (3.42) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    71 6cjq:D (3.42) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    72 6cjq:D (3.42) BS02 PGW ? GO:0005221 ... G0GA88 30028291
    73 6cjq:D (3.42) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    74 6cjq:D (3.42) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    75 6cjt:A (3.46) BS02 PGW ? GO:0005221 ... G0GA88 30028291
    76 6cjt:A (3.46) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    77 6cjt:A (3.46) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    78 6cjt:B (3.46) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    79 6cjt:B (3.46) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    80 6cjt:B (3.46) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    81 6cjt:C (3.46) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    82 6cjt:C (3.46) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    83 6cjt:C (3.46) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    84 6cjt:D (3.46) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    85 6cjt:D (3.46) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    86 6cjt:D (3.46) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    87 6cju:A (3.35) BS02 PGW ? GO:0005221 ... G0GA88 30028291
    88 6cju:A (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    89 6cju:A (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    90 6cju:A (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    91 6cju:B (3.35) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    92 6cju:B (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    93 6cju:B (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    94 6cju:B (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    95 6cju:C (3.35) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    96 6cju:C (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    97 6cju:C (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    98 6cju:C (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    99 6cju:D (3.35) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    100 6cju:D (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    101 6cju:D (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    102 6cju:D (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    103 6to7:A (2.26) BS02 PGW ? GO:0004930 ... O43613 31860301
    104 6to7:A (2.26) BS03 PGW ? GO:0004930 ... O43613 31860301
    105 6to7:B (2.26) BS01 PGW ? GO:0004930 ... O43613 31860301
    106 6to7:B (2.26) BS03 PGW ? GO:0004930 ... O43613 31860301
    107 6tod:A (2.11) BS02 PGW ? GO:0004930 ... O43613 31860301
    108 6tod:A (2.11) BS03 PGW ? GO:0004930 ... O43613 31860301
    109 6tod:B (2.11) BS01 PGW ? GO:0004930 ... O43613 31860301
    110 6tod:B (2.11) BS03 PGW ? GO:0004930 ... O43613 31860301
    111 6tos:A (2.13) BS02 PGW ? GO:0004930 ... O43613 31860301
    112 6tos:A (2.13) BS03 PGW ? GO:0004930 ... O43613 31860301
    113 6tos:B (2.13) BS02 PGW ? GO:0004930 ... O43613 31860301
    114 6tos:B (2.13) BS03 PGW ? GO:0004930 ... O43613 31860301
    115 6tot:A (2.22) BS02 PGW ? GO:0004930 ... O43613 31860301
    116 6tot:A (2.22) BS03 PGW ? GO:0004930 ... O43613 31860301
    117 6tot:B (2.22) BS01 PGW ? GO:0004930 ... O43613 31860301
    118 6tot:B (2.22) BS02 PGW ? GO:0004930 ... O43613 31860301
    119 6tp3:A (3.04) BS02 PGW ? GO:0004930 ... O43613 31860301
    120 6tp3:A (3.04) BS03 PGW ? GO:0004930 ... O43613 31860301
    121 6tp3:B (3.04) BS01 PGW ? GO:0004930 ... O43613 31860301
    122 6tp3:B (3.04) BS03 PGW ? GO:0004930 ... O43613 31860301
    123 6tp4:A (3.011) BS02 PGW ? GO:0004930 ... O43613 31860301
    124 6tp4:A (3.011) BS03 PGW ? GO:0004930 ... O43613 31860301
    125 6tp4:B (3.011) BS01 PGW ? GO:0004930 ... O43613 31860301
    126 6tp4:B (3.011) BS02 PGW ? GO:0004930 ... O43613 31860301
    127 6tp6:A (2.338) BS02 PGW ? GO:0004930 ... O43613 31860301
    128 6tp6:A (2.338) BS03 PGW ? GO:0004930 ... O43613 31860301
    129 6tp6:B (2.338) BS01 PGW ? GO:0004930 ... O43613 31860301
    130 6tp6:B (2.338) BS03 PGW ? GO:0004930 ... O43613 31860301
    131 6tq4:A (2.299) BS02 PGW ? GO:0004930 ... O43613 31860301
    132 6tq4:A (2.299) BS03 PGW ? GO:0004930 ... O43613 31860301
    133 6tq4:B (2.299) BS01 PGW ? GO:0004930 ... O43613 31860301
    134 6tq4:B (2.299) BS03 PGW ? GO:0004930 ... O43613 31860301
    135 6tq6:A (2.546) BS02 PGW ? GO:0004930 ... O43613 31860301
    136 6tq6:A (2.546) BS03 PGW ? GO:0004930 ... O43613 31860301
    137 6tq6:B (2.546) BS01 PGW ? GO:0004930 ... O43613 31860301
    138 6tq6:B (2.546) BS03 PGW ? GO:0004930 ... O43613 31860301
    139 6tq7:A (2.6636) BS03 PGW ? GO:0004930 ... O43613 31860301
    140 6tq7:A (2.6636) BS04 PGW ? GO:0004930 ... O43613 31860301
    141 6tq7:B (2.6636) BS01 PGW ? GO:0004930 ... O43613 31860301
    142 6tq7:B (2.6636) BS04 PGW ? GO:0004930 ... O43613 31860301
    143 6tq9:A (2.655) BS03 PGW ? GO:0004930 ... O43613 31860301
    144 6tq9:A (2.655) BS04 PGW ? GO:0004930 ... O43613 31860301
    145 6tq9:B (2.655) BS01 PGW ? GO:0004930 ... O43613 31860301
    146 6tq9:B (2.655) BS02 PGW ? GO:0004930 ... O43613 31860301
    147 6v35:A (3.5) BS01 PGW ? GO:0005216 ... Q12791 31815672
    148 6v35:A (3.5) BS02 PGW ? GO:0005216 ... Q12791 31815672
    149 6v35:A (3.5) BS03 PGW ? GO:0005216 ... Q12791 31815672
    150 6v35:A (3.5) BS05 PGW ? GO:0005216 ... Q12791 31815672
    151 6v35:A (3.5) BS07 PGW ? GO:0005216 ... Q12791 31815672
    152 6v35:B (3.5) BS01 PGW ? GO:0005216 ... Q12791 31815672
    153 6v35:B (3.5) BS02 PGW ? GO:0005216 ... Q12791 31815672
    154 6v35:B (3.5) BS03 PGW ? GO:0005216 ... Q12791 31815672
    155 6v35:B (3.5) BS04 PGW ? GO:0005216 ... Q12791 31815672
    156 6v35:B (3.5) BS05 PGW ? GO:0005216 ... Q12791 31815672
    157 6v35:C (3.5) BS01 PGW ? GO:0005216 ... Q12791 31815672
    158 6v35:C (3.5) BS02 PGW ? GO:0005216 ... Q12791 31815672
    159 6v35:C (3.5) BS03 PGW ? GO:0005216 ... Q12791 31815672
    160 6v35:C (3.5) BS04 PGW ? GO:0005216 ... Q12791 31815672
    161 6v35:C (3.5) BS07 PGW ? GO:0005216 ... Q12791 31815672
    162 6v35:D (3.5) BS01 PGW ? GO:0005216 ... Q12791 31815672
    163 6v35:D (3.5) BS02 PGW ? GO:0005216 ... Q12791 31815672
    164 6v35:D (3.5) BS03 PGW ? GO:0005216 ... Q12791 31815672
    165 6v35:D (3.5) BS04 PGW ? GO:0005216 ... Q12791 31815672
    166 6v35:D (3.5) BS05 PGW ? GO:0005216 ... Q12791 31815672
    167 6v35:E (3.5) BS02 PGW ? GO:0001508 ... Q86W47 31815672
    168 6v35:F (3.5) BS01 PGW ? GO:0001508 ... Q86W47 31815672
    169 6v35:G (3.5) BS02 PGW ? GO:0001508 ... Q86W47 31815672
    170 6v35:H (3.5) BS01 PGW ? GO:0001508 ... Q86W47 31815672
    171 6vxz:A (3.42) BS02 PGW ? GO:0005221 ... G0GA88 33328472
    172 6vxz:A (3.42) BS03 PGW ? GO:0005221 ... G0GA88 33328472
    173 6vxz:B (3.42) BS02 PGW ? GO:0005221 ... G0GA88 33328472
    174 6vxz:B (3.42) BS03 PGW ? GO:0005221 ... G0GA88 33328472
    175 6vxz:C (3.42) BS02 PGW ? GO:0005221 ... G0GA88 33328472
    176 6vxz:C (3.42) BS03 PGW ? GO:0005221 ... G0GA88 33328472
    177 6vxz:D (3.42) BS02 PGW ? GO:0005221 ... G0GA88 33328472
    178 6vxz:D (3.42) BS03 PGW ? GO:0005221 ... G0GA88 33328472
    179 7cge:A (2.9) BS01 PGW ? GO:0005515 ... P64606 32884137
    180 7cge:A (2.9) BS02 PGW ? GO:0005515 ... P64606 32884137
    181 7cge:A (2.9) BS03 PGW ? GO:0005515 ... P64606 32884137
    182 7cge:A (2.9) BS04 PGW ? GO:0005515 ... P64606 32884137
    183 7cge:A (2.9) BS05 PGW ? GO:0005515 ... P64606 32884137
    184 7cge:A (2.9) BS06 PGW ? GO:0005515 ... P64606 32884137
    185 7cge:D (2.9) BS01 PGW ? GO:0005515 ... P64606 32884137
    186 7cge:D (2.9) BS02 PGW ? GO:0005515 ... P64606 32884137
    187 7cge:D (2.9) BS03 PGW ? GO:0005515 ... P64606 32884137
    188 7cge:D (2.9) BS04 PGW ? GO:0005515 ... P64606 32884137
    189 7cge:D (2.9) BS05 PGW ? GO:0005515 ... P64606 32884137
    190 7cge:D (2.9) BS06 PGW ? GO:0005515 ... P64606 32884137
    191 7cge:G (2.9) BS01 PGW ? GO:0005515 ... P64604 32884137
    192 7cge:J (2.9) BS01 PGW ? GO:0005515 ... P64604 32884137
    193 7f47:A (2.99) BS01 PGW ? GO:0005886 ... Q2K4J4 N/A
    194 7l6q:A (2.5) BS01 PGW ? GO:0004888 ... E0SJQ4 34083441
    195 7l6q:A (2.5) BS03 PGW ? GO:0004888 ... E0SJQ4 34083441
    196 7l6q:B (2.5) BS01 PGW ? GO:0004888 ... E0SJQ4 34083441
    197 7l6q:C (2.5) BS01 PGW ? GO:0004888 ... E0SJQ4 34083441
    198 7l6q:D (2.5) BS01 PGW ? GO:0004888 ... E0SJQ4 34083441
    199 7l6q:E (2.5) BS01 PGW ? GO:0004888 ... E0SJQ4 34083441
    200 7o0u:H1 (2.35) BS02 PGW ? GO:0016020 ... A0A143BJ28 35171663
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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