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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hld:A (2.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 8172897
    2 1hld:B (2.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 8172897
    3 1mgo:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 12501206 MOAD: Ki=51uM
    4 1mgo:B (1.2) BS05 PFB 1.1.1.1 GO:0004022 ... P00327 12501206 MOAD: Ki=51uM
    5 3oq6:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 21184752
    6 3oq6:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 21184752
    7 4dwv:A (1.14) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 22531044 MOAD: Ki=0.52uM
    8 4dwv:B (1.14) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 22531044 MOAD: Ki=0.52uM
    9 4nfh:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 24437493
    10 4nfh:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 24437493
    11 4ng5:A (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 24437493 MOAD: Ki=1.9uM
    12 4ng5:B (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 24437493 MOAD: Ki=1.9uM
    13 5cdg:A (1.4) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    14 5cdg:B (1.4) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    15 5cds:A (1.4) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    16 5cds:B (1.4) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    17 5cdt:A (1.7) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    18 5cdt:B (1.7) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    19 5kcp:A (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 28025168 MOAD: Ki=740uM
    20 5kcp:A (1.1) BS05 PFB 1.1.1.1 GO:0004022 ... P00327 28025168 MOAD: Ki=740uM
    21 5kcp:B (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 28025168 MOAD: Ki=740uM
    22 5kcp:B (1.1) BS05 PFB 1.1.1.1 GO:0004022 ... P00327 28025168 MOAD: Ki=740uM
    23 5kj1:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 36189742
    24 5kj1:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 36189742
    25 5kj6:A (1.14) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    26 5kj6:B (1.14) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    27 5kjc:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    28 5kjc:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    29 5kje:A (1.26) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    30 5kje:B (1.26) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 29271062
    31 6o91:A (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 31994873
    32 6o91:B (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 31994873
    33 6owm:A (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 31994873
    34 6owm:B (1.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 31994873
    35 7udr:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    36 7udr:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    37 7uec:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    38 7uec:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    39 7uee:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    40 7uee:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    41 7uef:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    42 7uef:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    43 7uei:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    44 7uei:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    45 7uej:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    46 7uej:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    47 7uhv:A (1.3) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    48 7uhv:B (1.3) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    49 7uhw:A (1.3) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    50 7uhw:B (1.3) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    51 7uhx:A (1.3) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    52 7uhx:B (1.3) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    53 8g4v:A (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    54 8g4v:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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