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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1w8e:A (2.2) BS05 PER 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    2 1wx2:A (1.8) BS03 PER 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    3 1wx4:A (1.5) BS03 PER 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    4 1yq9:H (2.35) BS04 PER 1.12.2.1 GO:0008901 ... P12944 15803334
    5 1yq9:I (2.35) BS04 PER 1.12.2.1 GO:0008901 ... P12944 15803334
    6 1yqw:Q (1.83) BS05 PER 1.12.2.1 GO:0008901 ... P18188 15803334
    7 1yqw:R (1.83) BS03 PER 1.12.2.1 GO:0008901 ... P18188 15803334
    8 1yqw:S (1.83) BS04 PER 1.12.2.1 GO:0008901 ... P18188 15803334
    9 2ji3:B (1.95) BS03 PER 1.15.1.2 GO:0005506 ... Q46495 17446401
    10 2ji3:C (1.95) BS03 PER 1.15.1.2 GO:0005506 ... Q46495 17446401
    11 2ji3:D (1.95) BS03 PER 1.15.1.2 GO:0005506 ... Q46495 17446401
    12 2qt6:B (1.5) BS05 PER 1.10.3.2 GO:0005507 ... Q5EBY5 17897461
    13 2vlx:A (1.3) BS02 PER 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 18215120
    14 2vlz:A (1.5) BS02 PER 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 18215120
    15 2zxw:A (2.5) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    16 2zxw:N (2.5) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    17 3abl:A (2.1) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    18 3abl:N (2.1) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    19 3abm:A (1.95) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    20 3abm:N (1.95) BS02 PER 7.1.1.9 GO:0004129 ... P00396 19164527
    21 3s8f:A (1.8) BS04 PER 7.1.1.9 GO:0004129 ... Q5SJ79 21814577
    22 3s8g:A (1.8) BS04 PER 7.1.1.9 GO:0004129 ... Q5SJ79 21814577
    23 5vg0:A (1.1) BS02 PER 3.2.1.14 N/A C7R4I0 28481095
    24 5vg0:B (1.1) BS02 PER 3.2.1.14 N/A C7R4I0 28481095
    25 5vg1:B (2.1) BS02 PER 3.2.1.14 N/A C7R4I0 28481095
    26 6jua:B (1.45) BS03 PER 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    27 6jub:B (1.54) BS03 PER 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    28 6juc:B (1.44) BS03 PER 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    29 6jud:B (1.56) BS03 PER 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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