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BioLiP
Download all results in tab-seperated text for 305 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4i7e:C (2.0) BS02 PEP 2.7.1.11 GO:0003872 ... P00512 23859543 MOAD: Kd=0.45uM
    202 4i7e:D (2.0) BS01 PEP 2.7.1.11 GO:0003872 ... P00512 23859543 MOAD: Kd=0.45uM
    203 4i7e:D (2.0) BS02 PEP 2.7.1.11 GO:0003872 ... P00512 23859543 MOAD: Kd=0.45uM
    204 4owg:A (1.55) BS01 PEP 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00939 N/A
    205 4owg:B (1.55) BS01 PEP 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00939 N/A
    206 4ucg:A (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    207 4ucg:B (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    208 4ucg:C (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    209 4ucg:D (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    210 4wpt:A (1.6) BS01 PEP 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    211 4wpu:A (2.26) BS02 PEP 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    212 4z17:A (2.65) BS02 PEP 4.2.1.11 GO:0000015 ... A9WCM4 26082925
    213 4z17:B (2.65) BS02 PEP 4.2.1.11 GO:0000015 ... A9WCM4 26082925
    214 4z1d:A (1.65) BS01 PEP 2.5.1.55 GO:0005737 ... P56060 26649906
    215 4z1d:B (1.65) BS01 PEP 2.5.1.55 GO:0005737 ... P56060 26649906
    216 5boe:A (1.6) BS01 PEP 4.2.1.11 GO:0000015 ... O69174 26627653
    217 5boe:B (1.6) BS01 PEP 4.2.1.11 GO:0000015 ... O69174 26627653
    218 5cz0:A (2.5) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    219 5cz0:B (2.5) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    220 5cz0:C (2.5) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    221 5cz0:D (2.5) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    222 5czs:A (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    223 5czs:B (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    224 5czs:C (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    225 5czs:D (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    226 5d02:A (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    227 5d02:B (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    228 5d02:C (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    229 5d02:D (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    230 5d03:A (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    231 5d03:B (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    232 5d03:C (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    233 5d03:D (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    234 5d05:A (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    235 5d05:B (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    236 5d05:C (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    237 5d05:D (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    238 5d09:A (2.35) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    239 5dcb:A (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    240 5dcb:B (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    241 5dcb:C (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    242 5dcb:D (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    243 5huc:A (2.45) BS02 PEP 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    244 5hue:A (2.65) BS02 PEP 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    245 5j04:A (2.3) BS01 PEP 4.2.1.11 GO:0000015 ... Q31QJ8 N/A
    246 5j04:B (2.3) BS01 PEP 4.2.1.11 GO:0000015 ... Q31QJ8 N/A
    247 5jvj:A (2.898) BS01 PEP 2.7.9.1 GO:0003824 ... P22221 28358005
    248 5jvj:B (2.898) BS01 PEP 2.7.9.1 GO:0003824 ... P22221 28358005
    249 5jvl:A (2.9) BS03 PEP 2.7.9.1 GO:0003824 ... P22221 28358005
    250 5jvl:B (2.9) BS01 PEP 2.7.9.1 GO:0003824 ... P22221 28358005
    251 5jvl:C (2.9) BS02 PEP 2.7.9.1 GO:0003824 ... P22221 28358005
    252 5jvl:D (2.9) BS03 PEP 2.7.9.1 GO:0003824 ... P22221 28358005
    253 5jvn:A (2.9) BS02 PEP 2.7.9.1 GO:0003824 ... Q42736 28358005
    254 5uxm:A (1.54) BS01 PEP 2.5.1.54 GO:0003849 ... Q9I000 29608284
    255 5uxn:A (2.2) BS04 PEP 2.5.1.54 GO:0003849 ... Q9I000 29608284
    256 5uxo:A (2.35) BS02 PEP 2.5.1.54 GO:0003849 ... Q9I000 29608284
    257 6bfz:E (2.21) BS02 PEP 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    258 6bmc:A (2.7) BS01 PEP 2.5.1.54 GO:0003849 ... G3XCJ9 30242059
    259 6bmc:B (2.7) BS02 PEP 2.5.1.54 GO:0003849 ... G3XCJ9 30242059
    260 6bwh:A (2.18) BS01 PEP 2.7.7.105 GO:0005525 ... P9WP83 30952857
    261 6bwh:B (2.18) BS01 PEP 2.7.7.105 GO:0005525 ... P9WP83 30952857
    262 6bwh:C (2.18) BS01 PEP 2.7.7.105 GO:0005525 ... P9WP83 30952857
    263 6nn4:A (2.15) BS02 PEP 2.7.1.40 GO:0000287 ... P30613 31204694
    264 6nn4:B (2.15) BS02 PEP 2.7.1.40 GO:0000287 ... P30613 31204694
    265 6nn4:C (2.15) BS02 PEP 2.7.1.40 GO:0000287 ... P30613 31204694
    266 6nn4:D (2.15) BS02 PEP 2.7.1.40 GO:0000287 ... P30613 31204694
    267 7c8i:A (2.5) BS01 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    268 7c8i:B (2.5) BS02 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    269 7c8i:C (2.5) BS01 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    270 7c8i:D (2.5) BS02 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    271 7c8i:E (2.5) BS01 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    272 7c8i:F (2.5) BS02 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    273 7c8i:G (2.5) BS01 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    274 7c8i:H (2.5) BS02 PEP 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    275 7dlr:A (2.25) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    276 7e4f:A (2.3) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    277 7e51:A (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    278 7e51:B (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    279 7e51:C (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    280 7e51:D (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    281 7e51:E (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    282 7e51:F (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    283 7e51:G (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    284 7e51:H (3.23) BS01 PEP 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    285 7l3m:A (2.07) BS02 PEP 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 34584739
    286 7l3v:A (1.98) BS02 PEP 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 34584739
    287 7ri0:B (2.3) BS02 PEP 4.2.1.11 GO:0000015 ... Q96X30 35247004
    288 8e0v:B (2.3) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 36197914
    289 8e0v:C (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 36197914
    290 8e0x:A (1.97) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 36197914
    291 8e0x:B (1.97) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 36197914
    292 8e0x:C (1.97) BS01 PEP 2.5.1.54 GO:0003849 ... P0AB91 36197914
    293 8e0x:D (1.97) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 36197914
    294 8iaw:A (2.89) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    295 8iaw:B (2.89) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    296 8iax:A (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    297 8iax:B (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    298 8iax:C (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    299 8iax:D (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    300 8iax:E (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    301 8iax:F (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    302 8iax:G (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    303 8iax:H (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    304 8uel:A (2.49) BS01 PEP 4.2.1.11 GO:0000015 ... O96656 38033172
    305 8uel:B (2.49) BS01 PEP 4.2.1.11 GO:0000015 ... O96656 38033172
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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