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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16401 7y7a:wX (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16402 7y7a:wX (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16403 7y7a:wX (4.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    16404 7y7a:wY (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16405 7y7a:wY (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16406 7y7a:wY (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16407 7y7a:wY (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16408 7y7a:wb (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    16409 7y7a:wb (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    16410 7y7a:wb (4.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    16411 7y7a:wb (4.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    16412 7y7a:wb (4.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    16413 7y7a:wb (4.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    16414 7y7a:wb (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    16415 7y7a:wb (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    16416 7y7a:wb (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    16417 7y7a:x6 (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    16418 7y7a:x6 (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    16419 7y7a:x6 (4.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    16420 7y7a:x6 (4.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    16421 7y7a:x6 (4.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    16422 7y7a:x6 (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    16423 7y7a:x6 (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    16424 7y7a:x6 (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    16425 7y7a:xG (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16426 7y7a:xG (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16427 7y7a:xG (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16428 7y7a:xG (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16429 7y7a:xN (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16430 7y7a:xN (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16431 7y7a:xQ (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    16432 7y7a:xQ (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    16433 7y7a:xQ (4.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    16434 7y7a:xQ (4.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    16435 7y7a:xQ (4.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    16436 7y7a:xQ (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    16437 7y7a:xQ (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    16438 7y7a:xQ (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    16439 7y7a:xT (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    16440 7y7a:xT (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    16441 7y7a:xT (4.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    16442 7y7a:xT (4.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    16443 7y7a:xT (4.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    16444 7y7a:xT (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    16445 7y7a:xT (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    16446 7y7a:xT (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    16447 7y7a:xX (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16448 7y7a:xX (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16449 7y7a:xX (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16450 7y7a:xX (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16451 7y7a:xY (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16452 7y7a:xY (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16453 7y7a:xb (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    16454 7y7a:xb (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    16455 7y7a:xb (4.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    16456 7y7a:xb (4.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    16457 7y7a:xb (4.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    16458 7y7a:xb (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    16459 7y7a:xb (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    16460 7y7a:xb (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    16461 7y7a:y6 (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    16462 7y7a:y6 (4.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    16463 7y7a:y6 (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    16464 7y7a:y6 (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    16465 7y7a:y6 (4.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    16466 7y7a:y6 (4.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    16467 7y7a:y6 (4.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    16468 7y7a:yG (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16469 7y7a:yG (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16470 7y7a:yG (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16471 7y7a:yG (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16472 7y7a:yN (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16473 7y7a:yN (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16474 7y7a:yN (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16475 7y7a:yQ (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    16476 7y7a:yQ (4.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    16477 7y7a:yQ (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    16478 7y7a:yQ (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    16479 7y7a:yQ (4.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    16480 7y7a:yQ (4.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    16481 7y7a:yQ (4.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    16482 7y7a:yT (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    16483 7y7a:yT (4.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    16484 7y7a:yT (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    16485 7y7a:yT (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    16486 7y7a:yT (4.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    16487 7y7a:yT (4.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    16488 7y7a:yT (4.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    16489 7y7a:yX (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16490 7y7a:yX (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16491 7y7a:yX (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16492 7y7a:yX (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16493 7y7a:yY (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16494 7y7a:yY (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16495 7y7a:yY (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16496 7y7a:yb (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    16497 7y7a:yb (4.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    16498 7y7a:yb (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    16499 7y7a:yb (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    16500 7y7a:yb (4.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    16501 7y7a:yb (4.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    16502 7y7a:z6 (4.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16503 7y7a:z6 (4.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16504 7y7a:z6 (4.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16505 7y7a:z6 (4.3) BS05 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16506 7y7a:zG (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16507 7y7a:zG (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16508 7y7a:zG (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16509 7y7a:zG (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16510 7y7a:zN (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16511 7y7a:zN (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16512 7y7a:zN (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16513 7y7a:zQ (4.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16514 7y7a:zQ (4.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16515 7y7a:zQ (4.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16516 7y7a:zT (4.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16517 7y7a:zT (4.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16518 7y7a:zT (4.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16519 7y7a:zT (4.3) BS05 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16520 7y7a:zX (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16521 7y7a:zX (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16522 7y7a:zX (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16523 7y7a:zX (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16524 7y7a:zY (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16525 7y7a:zY (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16526 7y7a:zY (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16527 7y7a:zb (4.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16528 7y7a:zb (4.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16529 7y7a:zb (4.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    16530 8b4n:AAA (1.6) BS01 PEB ? GO:0009507 ... P11392 36643001
    16531 8b4n:AAA (1.6) BS02 PEB ? GO:0009507 ... P11392 36643001
    16532 8b4n:AAA (1.6) BS03 PEB ? GO:0009507 ... P11392 36643001
    16533 8b4n:AAA (1.6) BS04 PEB ? GO:0009507 ... P11392 36643001
    16534 8b4n:BBB (1.6) BS01 PEB ? GO:0009507 ... P11393 36643001
    16535 8b4n:BBB (1.6) BS02 PEB ? GO:0009507 ... P11393 36643001
    16536 8b4n:BbB (1.6) BS01 PEB ? N/A N/A 36643001
    16537 8b4n:BbB (1.6) BS03 PEB ? N/A N/A 36643001
    16538 8b4n:BbB (1.6) BS04 PEB ? N/A N/A 36643001
    16539 8b4n:CCC (1.6) BS01 PEB ? GO:0009507 ... P11392 36643001
    16540 8b4n:CCC (1.6) BS02 PEB ? GO:0009507 ... P11392 36643001
    16541 8b4n:CCC (1.6) BS03 PEB ? GO:0009507 ... P11392 36643001
    16542 8b4n:CCC (1.6) BS04 PEB ? GO:0009507 ... P11392 36643001
    16543 8b4n:DDD (1.6) BS01 PEB ? GO:0009507 ... P11393 36643001
    16544 8b4n:DDD (1.6) BS02 PEB ? GO:0009507 ... P11393 36643001
    16545 8b4n:DbD (1.6) BS01 PEB ? N/A N/A 36643001
    16546 8b4n:DbD (1.6) BS03 PEB ? N/A N/A 36643001
    16547 8b4n:DbD (1.6) BS04 PEB ? N/A N/A 36643001
    16548 8el3:A (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    16549 8el3:A (1.57) BS03 PEB ? GO:0030089 ... U5TBU5 37957226
    16550 8el3:A (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    16551 8el3:A (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    16552 8el3:A (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    16553 8el3:A (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    16554 8el3:B (1.57) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    16555 8el3:B (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    16556 8el3:B (1.57) BS04 PEB ? GO:0009507 ... U5T8W0 37957226
    16557 8el3:B (1.57) BS05 PEB ? GO:0009507 ... U5T8W0 37957226
    16558 8el3:C (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    16559 8el3:C (1.57) BS02 PEB ? GO:0030089 ... U5TBJ3 37957226
    16560 8el3:C (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    16561 8el3:C (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    16562 8el3:C (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    16563 8el3:C (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    16564 8el3:D (1.57) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    16565 8el3:D (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    16566 8el3:E (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    16567 8el3:E (1.57) BS03 PEB ? GO:0030089 ... U5TBJ3 37957226
    16568 8el3:E (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    16569 8el3:E (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    16570 8el3:E (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    16571 8el3:E (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    16572 8el3:F (1.57) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    16573 8el3:F (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    16574 8el3:F (1.57) BS04 PEB ? GO:0009507 ... U5T8W0 37957226
    16575 8el3:F (1.57) BS05 PEB ? GO:0009507 ... U5T8W0 37957226
    16576 8el3:G (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    16577 8el3:G (1.57) BS02 PEB ? GO:0030089 ... U5TBU5 37957226
    16578 8el3:G (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    16579 8el3:G (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    16580 8el3:G (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    16581 8el3:G (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    16582 8el3:H (1.57) BS01 PEB ? GO:0009507 ... U5T8W0 37957226
    16583 8el3:H (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    16584 8el3:H (1.57) BS04 PEB ? GO:0009507 ... U5T8W0 37957226
    16585 8el3:H (1.57) BS05 PEB ? GO:0009507 ... U5T8W0 37957226
    16586 8el3:I (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    16587 8el3:I (1.57) BS03 PEB ? GO:0030089 ... U5TBJ3 37957226
    16588 8el3:I (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    16589 8el3:I (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    16590 8el3:I (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    16591 8el3:I (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    16592 8el3:J (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    16593 8el3:J (1.57) BS02 PEB ? GO:0030089 ... U5TBU5 37957226
    16594 8el3:J (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    16595 8el3:J (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    16596 8el3:J (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    16597 8el3:J (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    16598 8el3:K (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    16599 8el3:K (1.57) BS03 PEB ? GO:0030089 ... U5TBU5 37957226
    16600 8el3:K (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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