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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16001 7y7a:kp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16002 7y7a:kp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16003 7y7a:kp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16004 7y7a:l1 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16005 7y7a:l1 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16006 7y7a:l1 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16007 7y7a:l3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16008 7y7a:l3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16009 7y7a:l3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16010 7y7a:l4 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16011 7y7a:l4 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16012 7y7a:l4 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16013 7y7a:l6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16014 7y7a:l6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16015 7y7a:l6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16016 7y7a:l6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16017 7y7a:l8 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16018 7y7a:l8 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16019 7y7a:l8 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16020 7y7a:lC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16021 7y7a:lC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16022 7y7a:lC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16023 7y7a:lC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16024 7y7a:lC (4.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    16025 7y7a:lI (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16026 7y7a:lI (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16027 7y7a:lI (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16028 7y7a:lK (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16029 7y7a:lK (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16030 7y7a:lK (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16031 7y7a:lP (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16032 7y7a:lP (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16033 7y7a:lP (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16034 7y7a:lQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16035 7y7a:lQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16036 7y7a:lQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16037 7y7a:lQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16038 7y7a:lR (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16039 7y7a:lR (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16040 7y7a:lR (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16041 7y7a:lS (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16042 7y7a:lS (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16043 7y7a:lS (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16044 7y7a:lT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16045 7y7a:lT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16046 7y7a:lT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16047 7y7a:lT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16048 7y7a:lV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16049 7y7a:lV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16050 7y7a:lV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16051 7y7a:lV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16052 7y7a:lb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16053 7y7a:lb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16054 7y7a:lb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16055 7y7a:lb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16056 7y7a:le (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16057 7y7a:le (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16058 7y7a:le (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16059 7y7a:lj (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16060 7y7a:lj (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16061 7y7a:lj (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16062 7y7a:ll (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16063 7y7a:ll (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16064 7y7a:ll (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16065 7y7a:ln (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16066 7y7a:ln (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16067 7y7a:ln (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16068 7y7a:lp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16069 7y7a:lp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16070 7y7a:lp (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16071 7y7a:m1 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16072 7y7a:m1 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16073 7y7a:m1 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16074 7y7a:m1 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16075 7y7a:m3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16076 7y7a:m3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16077 7y7a:m3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16078 7y7a:m4 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16079 7y7a:m4 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16080 7y7a:m4 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16081 7y7a:m6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16082 7y7a:m6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16083 7y7a:m6 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16084 7y7a:m8 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16085 7y7a:m8 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16086 7y7a:m8 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16087 7y7a:m8 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16088 7y7a:mC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16089 7y7a:mC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16090 7y7a:mC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16091 7y7a:mI (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16092 7y7a:mI (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16093 7y7a:mI (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16094 7y7a:mI (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16095 7y7a:mK (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16096 7y7a:mK (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16097 7y7a:mK (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16098 7y7a:mK (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16099 7y7a:mP (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16100 7y7a:mP (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16101 7y7a:mP (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16102 7y7a:mP (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16103 7y7a:mQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16104 7y7a:mQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16105 7y7a:mQ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16106 7y7a:mR (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16107 7y7a:mR (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16108 7y7a:mR (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16109 7y7a:mR (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16110 7y7a:mS (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16111 7y7a:mS (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16112 7y7a:mS (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16113 7y7a:mS (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16114 7y7a:mT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16115 7y7a:mT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16116 7y7a:mT (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16117 7y7a:mV (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16118 7y7a:mV (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16119 7y7a:mV (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16120 7y7a:mb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16121 7y7a:mb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16122 7y7a:mb (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16123 7y7a:me (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16124 7y7a:me (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16125 7y7a:me (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16126 7y7a:mj (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16127 7y7a:mj (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16128 7y7a:mj (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16129 7y7a:ml (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16130 7y7a:ml (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16131 7y7a:ml (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16132 7y7a:ml (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16133 7y7a:mn (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16134 7y7a:mn (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16135 7y7a:mn (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16136 7y7a:mp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16137 7y7a:mp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16138 7y7a:mp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16139 7y7a:n6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16140 7y7a:n6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16141 7y7a:n6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16142 7y7a:n6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16143 7y7a:nQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16144 7y7a:nQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16145 7y7a:nQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16146 7y7a:nQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16147 7y7a:nT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16148 7y7a:nT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16149 7y7a:nT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16150 7y7a:nT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16151 7y7a:nb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16152 7y7a:nb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16153 7y7a:nb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16154 7y7a:nb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16155 7y7a:o6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16156 7y7a:o6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16157 7y7a:o6 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16158 7y7a:o6 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16159 7y7a:oQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16160 7y7a:oQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16161 7y7a:oQ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16162 7y7a:oQ (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16163 7y7a:oT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16164 7y7a:oT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16165 7y7a:oT (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16166 7y7a:oT (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16167 7y7a:ob (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16168 7y7a:ob (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16169 7y7a:ob (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16170 7y7a:ob (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16171 7y7a:p6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16172 7y7a:p6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16173 7y7a:p6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16174 7y7a:p6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16175 7y7a:pG (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16176 7y7a:pG (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16177 7y7a:pG (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16178 7y7a:pG (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16179 7y7a:pN (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16180 7y7a:pN (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16181 7y7a:pN (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16182 7y7a:pQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16183 7y7a:pQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16184 7y7a:pQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16185 7y7a:pQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16186 7y7a:pT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16187 7y7a:pT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16188 7y7a:pT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16189 7y7a:pT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    16190 7y7a:pX (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16191 7y7a:pX (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16192 7y7a:pX (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16193 7y7a:pX (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    16194 7y7a:pY (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    16195 7y7a:pY (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    16196 7y7a:pY (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    16197 7y7a:pb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    16198 7y7a:pb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    16199 7y7a:pb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    16200 7y7a:pb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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