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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 5y6p:bR (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1402 5y6p:bS (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1403 5y6p:bS (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1404 5y6p:bT (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1405 5y6p:bT (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1406 5y6p:bU (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1407 5y6p:bU (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1408 5y6p:bU (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1409 5y6p:bV (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1410 5y6p:bV (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1411 5y6p:bW (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1412 5y6p:bW (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1413 5y6p:bW (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1414 5y6p:bW (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1415 5y6p:bX (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1416 5y6p:bX (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1417 5y6p:bX (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1418 5y6p:bX (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1419 5y6p:bX (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    1420 5y6p:bX (3.5) BS06 PEB N/A GO:0015979 ... N/A 29045394
    1421 5y6p:bX (3.5) BS07 PEB N/A GO:0015979 ... N/A 29045394
    1422 5y6p:bY (3.5) BS01 PEB N/A N/A N/A 29045394
    1423 5y6p:bY (3.5) BS02 PEB N/A N/A N/A 29045394
    1424 5y6p:bY (3.5) BS03 PEB N/A N/A N/A 29045394
    1425 5y6p:bY (3.5) BS04 PEB N/A N/A N/A 29045394
    1426 5y6p:bY (3.5) BS05 PEB N/A N/A N/A 29045394
    1427 5y6p:bY (3.5) BS06 PEB N/A N/A N/A 29045394
    1428 5y6p:bY (3.5) BS07 PEB N/A N/A N/A 29045394
    1429 5y6p:bY (3.5) BS11 PEB N/A N/A N/A 29045394
    1430 5y6p:bY (3.5) BS12 PEB N/A N/A N/A 29045394
    1431 5y6p:bY (3.5) BS13 PEB N/A N/A N/A 29045394
    1432 5y6p:bZ (3.5) BS01 PEB N/A N/A N/A 29045394
    1433 5y6p:bZ (3.5) BS02 PEB N/A N/A N/A 29045394
    1434 5y6p:bZ (3.5) BS03 PEB N/A N/A N/A 29045394
    1435 5y6p:bZ (3.5) BS04 PEB N/A N/A N/A 29045394
    1436 5y6p:bZ (3.5) BS05 PEB N/A N/A N/A 29045394
    1437 5y6p:bZ (3.5) BS06 PEB N/A N/A N/A 29045394
    1438 5y6p:bZ (3.5) BS07 PEB N/A N/A N/A 29045394
    1439 5y6p:ba (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1440 5y6p:ba (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1441 5y6p:bb (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1442 5y6p:bb (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1443 5y6p:bc (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1444 5y6p:bc (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1445 5y6p:bd (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1446 5y6p:bd (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1447 5y6p:be (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1448 5y6p:bf (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1449 5y6p:bf (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1450 5y6p:bg (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1451 5y6p:bh (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1452 5y6p:bh (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1453 5y6p:bh (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1454 5y6p:bi (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1455 5y6p:bi (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1456 5y6p:bj (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1457 5y6p:bj (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1458 5y6p:bj (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1459 5y6p:bk (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1460 5y6p:bl (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1461 5y6p:bl (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1462 5y6p:bm (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1463 5y6p:bm (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1464 5y6p:bm (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1465 5y6p:bn (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1466 5y6p:bn (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1467 5y6p:bn (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1468 5y6p:bo (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1469 5y6p:bo (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1470 5y6p:bo (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1471 5y6p:bp (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1472 5y6p:bp (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1473 5y6p:bp (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1474 5y6p:bq (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1475 5y6p:bq (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1476 5y6p:bq (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1477 5y6p:br (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1478 5y6p:br (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1479 5y6p:bs (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1480 5y6p:bs (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1481 5y6p:bs (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1482 5y6p:bt (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1483 5y6p:bt (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1484 5y6p:bt (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1485 5y6p:bu (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1486 5y6p:bu (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1487 5y6p:bu (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1488 5y6p:bv (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1489 5y6p:bv (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1490 5y6p:bw (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1491 5y6p:bw (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1492 5y6p:bx (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1493 5y6p:bx (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1494 5y6p:by (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1495 5y6p:by (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1496 5y6p:bz (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1497 5y6p:bz (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1498 5y6p:c3 (3.5) BS01 PEB N/A N/A N/A 29045394
    1499 5y6p:c3 (3.5) BS02 PEB N/A N/A N/A 29045394
    1500 5y6p:c3 (3.5) BS03 PEB N/A N/A N/A 29045394
    1501 5y6p:c3 (3.5) BS04 PEB N/A N/A N/A 29045394
    1502 5y6p:c3 (3.5) BS05 PEB N/A N/A N/A 29045394
    1503 5y6p:c3 (3.5) BS06 PEB N/A N/A N/A 29045394
    1504 5y6p:c3 (3.5) BS10 PEB N/A N/A N/A 29045394
    1505 5y6p:c4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1506 5y6p:c4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1507 5y6p:c4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1508 5y6p:c5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1509 5y6p:c5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1510 5y6p:c5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1511 5y6p:c6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1512 5y6p:c6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1513 5y6p:c6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1514 5y6p:c7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1515 5y6p:c7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1516 5y6p:c7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1517 5y6p:c8 (3.5) BS01 PEB N/A N/A N/A 29045394
    1518 5y6p:c8 (3.5) BS02 PEB N/A N/A N/A 29045394
    1519 5y6p:c8 (3.5) BS03 PEB N/A N/A N/A 29045394
    1520 5y6p:c8 (3.5) BS04 PEB N/A N/A N/A 29045394
    1521 5y6p:c8 (3.5) BS05 PEB N/A N/A N/A 29045394
    1522 5y6p:c8 (3.5) BS06 PEB N/A N/A N/A 29045394
    1523 5y6p:c8 (3.5) BS07 PEB N/A N/A N/A 29045394
    1524 5y6p:c9 (3.5) BS01 PEB N/A N/A N/A 29045394
    1525 5y6p:c9 (3.5) BS02 PEB N/A N/A N/A 29045394
    1526 5y6p:c9 (3.5) BS03 PEB N/A N/A N/A 29045394
    1527 5y6p:c9 (3.5) BS04 PEB N/A N/A N/A 29045394
    1528 5y6p:c9 (3.5) BS05 PEB N/A N/A N/A 29045394
    1529 5y6p:c9 (3.5) BS06 PEB N/A N/A N/A 29045394
    1530 5y6p:c9 (3.5) BS07 PEB N/A N/A N/A 29045394
    1531 5y6p:cA (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1532 5y6p:cA (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1533 5y6p:cA (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1534 5y6p:cB (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1535 5y6p:cB (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1536 5y6p:cC (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1537 5y6p:cC (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1538 5y6p:cD (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1539 5y6p:cD (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1540 5y6p:cD (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1541 5y6p:cE (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1542 5y6p:cE (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1543 5y6p:cF (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1544 5y6p:cF (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1545 5y6p:cG (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1546 5y6p:cG (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1547 5y6p:cG (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1548 5y6p:cH (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1549 5y6p:cH (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1550 5y6p:cI (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1551 5y6p:cI (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1552 5y6p:cI (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1553 5y6p:cI (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1554 5y6p:cJ (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1555 5y6p:cJ (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1556 5y6p:cK (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1557 5y6p:cK (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1558 5y6p:cL (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1559 5y6p:cL (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1560 5y6p:cM (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1561 5y6p:cM (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1562 5y6p:cN (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1563 5y6p:cN (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1564 5y6p:cO (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1565 5y6p:cO (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1566 5y6p:cP (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1567 5y6p:cP (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1568 5y6p:cQ (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1569 5y6p:cQ (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1570 5y6p:cR (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1571 5y6p:cR (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1572 5y6p:cS (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1573 5y6p:cS (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1574 5y6p:cS (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1575 5y6p:cT (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1576 5y6p:cT (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1577 5y6p:cT (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1578 5y6p:cU (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1579 5y6p:cU (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1580 5y6p:cU (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1581 5y6p:cV (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1582 5y6p:cV (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1583 5y6p:cW (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1584 5y6p:cW (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1585 5y6p:cX (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1586 5y6p:cX (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1587 5y6p:cX (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1588 5y6p:cX (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1589 5y6p:cY (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1590 5y6p:cY (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1591 5y6p:cY (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1592 5y6p:cY (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    1593 5y6p:cZ (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1594 5y6p:cZ (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1595 5y6p:ca (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1596 5y6p:cb (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1597 5y6p:cb (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1598 5y6p:cc (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1599 5y6p:cd (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1600 5y6p:cd (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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