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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14801 7y7a:Xn (4.3) BS04 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    14802 7y7a:Xp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14803 7y7a:Xp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14804 7y7a:Xp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14805 7y7a:Y1 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14806 7y7a:Y1 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14807 7y7a:Y1 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14808 7y7a:Y1 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14809 7y7a:Y2 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14810 7y7a:Y2 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14811 7y7a:Y2 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14812 7y7a:Y2 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14813 7y7a:Y3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14814 7y7a:Y3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14815 7y7a:Y3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14816 7y7a:Y3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14817 7y7a:Y4 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14818 7y7a:Y4 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14819 7y7a:Y4 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14820 7y7a:Y5 (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    14821 7y7a:Y5 (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    14822 7y7a:Y5 (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    14823 7y7a:Y5 (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    14824 7y7a:Y5 (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    14825 7y7a:Y5 (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    14826 7y7a:Y5 (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    14827 7y7a:Y5 (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    14828 7y7a:Y5 (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    14829 7y7a:Y6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14830 7y7a:Y6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14831 7y7a:Y6 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14832 7y7a:Y6 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14833 7y7a:Y8 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14834 7y7a:Y8 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14835 7y7a:Y8 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14836 7y7a:Y8 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14837 7y7a:YA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14838 7y7a:YA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14839 7y7a:YA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14840 7y7a:YA (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14841 7y7a:YC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14842 7y7a:YC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14843 7y7a:YC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14844 7y7a:YC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14845 7y7a:YD (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    14846 7y7a:YD (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    14847 7y7a:YD (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    14848 7y7a:YD (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    14849 7y7a:YD (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    14850 7y7a:YD (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    14851 7y7a:YD (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    14852 7y7a:YD (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    14853 7y7a:YD (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    14854 7y7a:YF (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14855 7y7a:YF (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14856 7y7a:YF (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14857 7y7a:YF (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14858 7y7a:YH (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14859 7y7a:YH (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14860 7y7a:YH (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14861 7y7a:YH (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14862 7y7a:YI (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14863 7y7a:YI (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14864 7y7a:YI (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14865 7y7a:YI (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14866 7y7a:YJ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14867 7y7a:YJ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14868 7y7a:YJ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14869 7y7a:YJ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14870 7y7a:YK (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14871 7y7a:YK (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14872 7y7a:YK (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14873 7y7a:YK (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14874 7y7a:YL (4.3) BS01 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14875 7y7a:YL (4.3) BS02 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14876 7y7a:YL (4.3) BS03 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14877 7y7a:YL (4.3) BS04 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14878 7y7a:YL (4.3) BS05 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14879 7y7a:YL (4.3) BS06 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14880 7y7a:YL (4.3) BS07 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14881 7y7a:YL (4.3) BS08 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14882 7y7a:YL (4.3) BS09 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14883 7y7a:YM (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14884 7y7a:YM (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14885 7y7a:YM (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14886 7y7a:YM (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14887 7y7a:YP (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14888 7y7a:YP (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14889 7y7a:YP (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14890 7y7a:YP (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14891 7y7a:YQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14892 7y7a:YQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14893 7y7a:YQ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14894 7y7a:YQ (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14895 7y7a:YR (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14896 7y7a:YR (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14897 7y7a:YR (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14898 7y7a:YR (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14899 7y7a:YS (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14900 7y7a:YS (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14901 7y7a:YS (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14902 7y7a:YS (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14903 7y7a:YT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14904 7y7a:YT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14905 7y7a:YT (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14906 7y7a:YT (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14907 7y7a:YU (4.3) BS01 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14908 7y7a:YU (4.3) BS02 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14909 7y7a:YU (4.3) BS03 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14910 7y7a:YU (4.3) BS04 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14911 7y7a:YU (4.3) BS05 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14912 7y7a:YU (4.3) BS06 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14913 7y7a:YU (4.3) BS07 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14914 7y7a:YU (4.3) BS08 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14915 7y7a:YU (4.3) BS09 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    14916 7y7a:YV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14917 7y7a:YV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14918 7y7a:YV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14919 7y7a:YV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14920 7y7a:YW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14921 7y7a:YW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14922 7y7a:YW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14923 7y7a:YW (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14924 7y7a:Ya (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14925 7y7a:Ya (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14926 7y7a:Ya (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14927 7y7a:Ya (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14928 7y7a:Yb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14929 7y7a:Yb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14930 7y7a:Yb (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14931 7y7a:Yb (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14932 7y7a:Yc (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14933 7y7a:Yc (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14934 7y7a:Yc (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14935 7y7a:Yc (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14936 7y7a:Ye (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14937 7y7a:Ye (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14938 7y7a:Ye (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14939 7y7a:Yf (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14940 7y7a:Yf (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14941 7y7a:Yf (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14942 7y7a:Yf (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14943 7y7a:Yg (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    14944 7y7a:Yg (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    14945 7y7a:Yg (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    14946 7y7a:Yg (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    14947 7y7a:Yg (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    14948 7y7a:Yg (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    14949 7y7a:Yg (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    14950 7y7a:Yg (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    14951 7y7a:Yg (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    14952 7y7a:Yh (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14953 7y7a:Yh (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14954 7y7a:Yh (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14955 7y7a:Yh (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14956 7y7a:Yi (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    14957 7y7a:Yi (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    14958 7y7a:Yi (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    14959 7y7a:Yi (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    14960 7y7a:Yi (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    14961 7y7a:Yi (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    14962 7y7a:Yi (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    14963 7y7a:Yi (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    14964 7y7a:Yi (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    14965 7y7a:Yj (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14966 7y7a:Yj (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14967 7y7a:Yj (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14968 7y7a:Yk (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14969 7y7a:Yk (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14970 7y7a:Yk (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14971 7y7a:Yk (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14972 7y7a:Yl (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14973 7y7a:Yl (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14974 7y7a:Yl (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14975 7y7a:Yl (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14976 7y7a:Yn (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14977 7y7a:Yn (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14978 7y7a:Yn (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14979 7y7a:Yp (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14980 7y7a:Yp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14981 7y7a:Yp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14982 7y7a:Yp (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14983 7y7a:Z1 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14984 7y7a:Z1 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14985 7y7a:Z1 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14986 7y7a:Z3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14987 7y7a:Z3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14988 7y7a:Z3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14989 7y7a:Z3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14990 7y7a:Z4 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14991 7y7a:Z4 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14992 7y7a:Z4 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14993 7y7a:Z4 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14994 7y7a:Z6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14995 7y7a:Z6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14996 7y7a:Z6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14997 7y7a:Z6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14998 7y7a:Z8 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14999 7y7a:Z8 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15000 7y7a:Z8 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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