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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14401 7y7a:Uk (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14402 7y7a:Ul (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14403 7y7a:Ul (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14404 7y7a:Ul (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14405 7y7a:Un (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14406 7y7a:Un (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14407 7y7a:Un (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14408 7y7a:Up (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14409 7y7a:Up (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14410 7y7a:Up (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14411 7y7a:V1 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14412 7y7a:V1 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14413 7y7a:V1 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14414 7y7a:V1 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14415 7y7a:V2 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14416 7y7a:V2 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14417 7y7a:V2 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14418 7y7a:V3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14419 7y7a:V3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14420 7y7a:V3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14421 7y7a:V3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14422 7y7a:V4 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14423 7y7a:V4 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14424 7y7a:V4 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14425 7y7a:V4 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14426 7y7a:V5 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14427 7y7a:V5 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14428 7y7a:V5 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14429 7y7a:V5 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14430 7y7a:V6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14431 7y7a:V6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14432 7y7a:V6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14433 7y7a:V6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14434 7y7a:V8 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14435 7y7a:V8 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14436 7y7a:V8 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14437 7y7a:V8 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14438 7y7a:VA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14439 7y7a:VA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14440 7y7a:VA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14441 7y7a:VA (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14442 7y7a:VC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14443 7y7a:VC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14444 7y7a:VC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14445 7y7a:VC (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14446 7y7a:VD (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14447 7y7a:VD (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14448 7y7a:VD (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14449 7y7a:VD (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14450 7y7a:VF (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14451 7y7a:VF (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14452 7y7a:VF (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14453 7y7a:VH (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14454 7y7a:VH (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14455 7y7a:VH (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14456 7y7a:VI (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14457 7y7a:VI (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14458 7y7a:VI (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14459 7y7a:VJ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14460 7y7a:VJ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14461 7y7a:VJ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14462 7y7a:VK (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14463 7y7a:VK (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14464 7y7a:VK (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14465 7y7a:VK (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14466 7y7a:VL (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14467 7y7a:VL (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14468 7y7a:VL (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14469 7y7a:VL (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14470 7y7a:VM (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14471 7y7a:VM (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14472 7y7a:VM (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14473 7y7a:VP (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14474 7y7a:VP (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14475 7y7a:VP (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14476 7y7a:VQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14477 7y7a:VQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14478 7y7a:VQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14479 7y7a:VQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14480 7y7a:VR (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14481 7y7a:VR (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14482 7y7a:VR (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14483 7y7a:VR (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14484 7y7a:VS (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14485 7y7a:VS (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14486 7y7a:VS (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14487 7y7a:VT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14488 7y7a:VT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14489 7y7a:VT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14490 7y7a:VT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14491 7y7a:VU (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14492 7y7a:VU (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14493 7y7a:VU (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14494 7y7a:VU (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14495 7y7a:VV (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14496 7y7a:VV (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14497 7y7a:VV (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14498 7y7a:VV (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14499 7y7a:VW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14500 7y7a:VW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14501 7y7a:VW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14502 7y7a:VW (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14503 7y7a:Va (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14504 7y7a:Va (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14505 7y7a:Vb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14506 7y7a:Vb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14507 7y7a:Vb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14508 7y7a:Vb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14509 7y7a:Vc (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14510 7y7a:Vc (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14511 7y7a:Vc (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14512 7y7a:Ve (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14513 7y7a:Ve (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14514 7y7a:Ve (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14515 7y7a:Vf (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14516 7y7a:Vf (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14517 7y7a:Vg (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14518 7y7a:Vg (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14519 7y7a:Vg (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14520 7y7a:Vg (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14521 7y7a:Vh (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14522 7y7a:Vh (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14523 7y7a:Vh (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14524 7y7a:Vi (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14525 7y7a:Vi (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14526 7y7a:Vi (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14527 7y7a:Vi (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14528 7y7a:Vj (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14529 7y7a:Vj (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14530 7y7a:Vj (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14531 7y7a:Vj (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14532 7y7a:Vk (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14533 7y7a:Vk (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14534 7y7a:Vk (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14535 7y7a:Vl (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14536 7y7a:Vl (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14537 7y7a:Vl (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14538 7y7a:Vn (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14539 7y7a:Vn (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14540 7y7a:Vn (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14541 7y7a:Vp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14542 7y7a:Vp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14543 7y7a:Vp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14544 7y7a:Vp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14545 7y7a:W1 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14546 7y7a:W1 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14547 7y7a:W1 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14548 7y7a:W1 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14549 7y7a:W2 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14550 7y7a:W2 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14551 7y7a:W2 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14552 7y7a:W2 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14553 7y7a:W3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14554 7y7a:W3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14555 7y7a:W3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14556 7y7a:W3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14557 7y7a:W4 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14558 7y7a:W4 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14559 7y7a:W4 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14560 7y7a:W5 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14561 7y7a:W5 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14562 7y7a:W5 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14563 7y7a:W6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14564 7y7a:W6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14565 7y7a:W6 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14566 7y7a:W8 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14567 7y7a:W8 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14568 7y7a:W8 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14569 7y7a:W8 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14570 7y7a:WA (4.3) BS01 PEB ? N/A A0A5J4YX67 36922595
    14571 7y7a:WA (4.3) BS02 PEB ? N/A A0A5J4YX67 36922595
    14572 7y7a:WC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14573 7y7a:WC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14574 7y7a:WC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14575 7y7a:WC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14576 7y7a:WD (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14577 7y7a:WD (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14578 7y7a:WD (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14579 7y7a:WF (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14580 7y7a:WF (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14581 7y7a:WF (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14582 7y7a:WF (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14583 7y7a:WH (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14584 7y7a:WH (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14585 7y7a:WH (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14586 7y7a:WH (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14587 7y7a:WI (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14588 7y7a:WI (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14589 7y7a:WI (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14590 7y7a:WJ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14591 7y7a:WJ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14592 7y7a:WJ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14593 7y7a:WJ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14594 7y7a:WK (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14595 7y7a:WK (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14596 7y7a:WK (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14597 7y7a:WK (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14598 7y7a:WL (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14599 7y7a:WL (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14600 7y7a:WM (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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