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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14001 7y7a:Rl (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14002 7y7a:Rl (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14003 7y7a:Rl (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14004 7y7a:Rl (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14005 7y7a:Rn (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14006 7y7a:Rn (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14007 7y7a:Rn (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14008 7y7a:Rn (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14009 7y7a:Rp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14010 7y7a:Rp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14011 7y7a:Rp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14012 7y7a:Rp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14013 7y7a:S1 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14014 7y7a:S1 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14015 7y7a:S1 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14016 7y7a:S2 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14017 7y7a:S2 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14018 7y7a:S2 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14019 7y7a:S2 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14020 7y7a:S3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14021 7y7a:S3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14022 7y7a:S3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14023 7y7a:S3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14024 7y7a:S4 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14025 7y7a:S4 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14026 7y7a:S4 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14027 7y7a:S4 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14028 7y7a:S5 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14029 7y7a:S5 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14030 7y7a:S5 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14031 7y7a:S6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14032 7y7a:S6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14033 7y7a:S6 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14034 7y7a:S8 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14035 7y7a:S8 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14036 7y7a:S8 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14037 7y7a:SA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14038 7y7a:SA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14039 7y7a:SA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14040 7y7a:SC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14041 7y7a:SC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14042 7y7a:SC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14043 7y7a:SC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14044 7y7a:SD (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14045 7y7a:SD (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14046 7y7a:SD (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14047 7y7a:SF (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14048 7y7a:SF (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14049 7y7a:SF (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14050 7y7a:SF (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14051 7y7a:SH (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14052 7y7a:SH (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14053 7y7a:SH (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14054 7y7a:SI (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14055 7y7a:SI (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14056 7y7a:SI (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14057 7y7a:SJ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14058 7y7a:SJ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14059 7y7a:SJ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14060 7y7a:SK (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14061 7y7a:SK (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14062 7y7a:SK (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14063 7y7a:SL (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14064 7y7a:SL (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14065 7y7a:SL (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14066 7y7a:SM (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14067 7y7a:SM (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14068 7y7a:SM (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14069 7y7a:SM (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14070 7y7a:SP (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14071 7y7a:SP (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14072 7y7a:SP (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14073 7y7a:SQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14074 7y7a:SQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14075 7y7a:SQ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14076 7y7a:SR (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14077 7y7a:SR (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14078 7y7a:SR (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14079 7y7a:SS (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14080 7y7a:SS (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14081 7y7a:SS (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14082 7y7a:ST (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14083 7y7a:ST (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14084 7y7a:ST (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14085 7y7a:SU (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14086 7y7a:SU (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14087 7y7a:SU (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14088 7y7a:SV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14089 7y7a:SV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14090 7y7a:SV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14091 7y7a:SV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14092 7y7a:SW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14093 7y7a:SW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14094 7y7a:SW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14095 7y7a:Sa (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14096 7y7a:Sa (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14097 7y7a:Sa (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14098 7y7a:Sb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14099 7y7a:Sb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14100 7y7a:Sb (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14101 7y7a:Sc (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14102 7y7a:Sc (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14103 7y7a:Sc (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14104 7y7a:Sc (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14105 7y7a:Se (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14106 7y7a:Se (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14107 7y7a:Se (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14108 7y7a:Se (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14109 7y7a:Sf (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14110 7y7a:Sf (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14111 7y7a:Sf (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14112 7y7a:Sg (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14113 7y7a:Sg (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14114 7y7a:Sg (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14115 7y7a:Sh (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14116 7y7a:Sh (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14117 7y7a:Sh (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14118 7y7a:Si (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14119 7y7a:Si (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14120 7y7a:Si (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14121 7y7a:Sj (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14122 7y7a:Sj (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14123 7y7a:Sj (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14124 7y7a:Sj (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14125 7y7a:Sk (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14126 7y7a:Sk (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14127 7y7a:Sk (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14128 7y7a:Sl (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14129 7y7a:Sl (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14130 7y7a:Sl (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14131 7y7a:Sn (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14132 7y7a:Sn (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14133 7y7a:Sn (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14134 7y7a:Sn (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14135 7y7a:Sp (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14136 7y7a:Sp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14137 7y7a:Sp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14138 7y7a:Sp (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14139 7y7a:T1 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14140 7y7a:T1 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14141 7y7a:T1 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14142 7y7a:T2 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14143 7y7a:T2 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14144 7y7a:T3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14145 7y7a:T3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14146 7y7a:T3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14147 7y7a:T3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14148 7y7a:T4 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14149 7y7a:T4 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14150 7y7a:T4 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14151 7y7a:T4 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14152 7y7a:T5 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14153 7y7a:T5 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14154 7y7a:T5 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14155 7y7a:T5 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14156 7y7a:T6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14157 7y7a:T6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14158 7y7a:T6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14159 7y7a:T6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14160 7y7a:T8 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14161 7y7a:T8 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14162 7y7a:T8 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14163 7y7a:TA (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14164 7y7a:TA (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14165 7y7a:TC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14166 7y7a:TC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14167 7y7a:TC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14168 7y7a:TC (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14169 7y7a:TD (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14170 7y7a:TD (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14171 7y7a:TD (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14172 7y7a:TD (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14173 7y7a:TF (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14174 7y7a:TF (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14175 7y7a:TH (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14176 7y7a:TH (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14177 7y7a:TH (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14178 7y7a:TH (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    14179 7y7a:TI (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14180 7y7a:TI (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14181 7y7a:TI (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14182 7y7a:TI (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14183 7y7a:TJ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14184 7y7a:TJ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14185 7y7a:TJ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    14186 7y7a:TK (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14187 7y7a:TK (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14188 7y7a:TK (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14189 7y7a:TL (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14190 7y7a:TL (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14191 7y7a:TL (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14192 7y7a:TM (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    14193 7y7a:TM (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    14194 7y7a:TP (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14195 7y7a:TP (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14196 7y7a:TP (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    14197 7y7a:TP (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    14198 7y7a:TQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    14199 7y7a:TQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    14200 7y7a:TQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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