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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13201 7y7a:LV (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13202 7y7a:LV (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13203 7y7a:LW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13204 7y7a:LW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13205 7y7a:LW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13206 7y7a:LW (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13207 7y7a:La (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13208 7y7a:La (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13209 7y7a:La (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13210 7y7a:Lb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13211 7y7a:Lb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13212 7y7a:Lb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13213 7y7a:Lb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13214 7y7a:Lc (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13215 7y7a:Lc (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13216 7y7a:Lc (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13217 7y7a:Lc (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13218 7y7a:Le (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13219 7y7a:Lf (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13220 7y7a:Lf (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13221 7y7a:Lf (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13222 7y7a:Lg (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13223 7y7a:Lg (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13224 7y7a:Lg (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13225 7y7a:Lg (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13226 7y7a:Lh (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13227 7y7a:Lh (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13228 7y7a:Lh (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13229 7y7a:Lh (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13230 7y7a:Lh (4.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    13231 7y7a:Li (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13232 7y7a:Li (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13233 7y7a:Li (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13234 7y7a:Li (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13235 7y7a:Lj (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13236 7y7a:Lk (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13237 7y7a:Lk (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13238 7y7a:Lk (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13239 7y7a:Lk (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13240 7y7a:Ll (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13241 7y7a:Ln (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13242 7y7a:Lp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13243 7y7a:Lp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13244 7y7a:Lp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13245 7y7a:Lp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13246 7y7a:M1 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13247 7y7a:M2 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13248 7y7a:M2 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13249 7y7a:M2 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13250 7y7a:M2 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13251 7y7a:M3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13252 7y7a:M3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13253 7y7a:M3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13254 7y7a:M3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13255 7y7a:M4 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13256 7y7a:M5 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13257 7y7a:M5 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13258 7y7a:M5 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13259 7y7a:M6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13260 7y7a:M6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13261 7y7a:M6 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13262 7y7a:M6 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13263 7y7a:M8 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13264 7y7a:MA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13265 7y7a:MA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13266 7y7a:MA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13267 7y7a:MC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13268 7y7a:MC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13269 7y7a:MC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13270 7y7a:MD (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13271 7y7a:MD (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13272 7y7a:MD (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13273 7y7a:MF (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13274 7y7a:MF (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13275 7y7a:MF (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13276 7y7a:MF (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13277 7y7a:MH (4.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    13278 7y7a:MH (4.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    13279 7y7a:MH (4.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    13280 7y7a:MH (4.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    13281 7y7a:MH (4.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    13282 7y7a:MH (4.3) BS06 PEB ? N/A A0A5J4YNU6 36922595
    13283 7y7a:MH (4.3) BS09 PEB ? N/A A0A5J4YNU6 36922595
    13284 7y7a:MH (4.3) BS10 PEB ? N/A A0A5J4YNU6 36922595
    13285 7y7a:MI (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13286 7y7a:MJ (4.3) BS01 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13287 7y7a:MJ (4.3) BS02 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13288 7y7a:MJ (4.3) BS03 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13289 7y7a:MJ (4.3) BS04 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13290 7y7a:MJ (4.3) BS05 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13291 7y7a:MJ (4.3) BS06 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13292 7y7a:MK (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13293 7y7a:ML (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13294 7y7a:ML (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13295 7y7a:ML (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13296 7y7a:MM (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13297 7y7a:MM (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13298 7y7a:MM (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13299 7y7a:MM (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13300 7y7a:MP (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13301 7y7a:MQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13302 7y7a:MQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13303 7y7a:MQ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13304 7y7a:MQ (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13305 7y7a:MR (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13306 7y7a:MS (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13307 7y7a:MT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13308 7y7a:MT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13309 7y7a:MT (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13310 7y7a:MT (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13311 7y7a:MU (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13312 7y7a:MU (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13313 7y7a:MU (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13314 7y7a:MV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13315 7y7a:MV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13316 7y7a:MV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13317 7y7a:MW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13318 7y7a:MW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13319 7y7a:MW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13320 7y7a:Ma (4.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    13321 7y7a:Ma (4.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    13322 7y7a:Ma (4.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    13323 7y7a:Ma (4.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    13324 7y7a:Ma (4.3) BS07 PEB ? N/A A0A5J4YNU6 36922595
    13325 7y7a:Ma (4.3) BS08 PEB ? N/A A0A5J4YNU6 36922595
    13326 7y7a:Mb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13327 7y7a:Mb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13328 7y7a:Mb (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13329 7y7a:Mb (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13330 7y7a:Mc (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13331 7y7a:Mc (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13332 7y7a:Mc (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13333 7y7a:Mc (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13334 7y7a:Me (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13335 7y7a:Mf (4.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    13336 7y7a:Mf (4.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    13337 7y7a:Mf (4.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    13338 7y7a:Mf (4.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    13339 7y7a:Mf (4.3) BS07 PEB ? N/A A0A5J4YNU6 36922595
    13340 7y7a:Mf (4.3) BS08 PEB ? N/A A0A5J4YNU6 36922595
    13341 7y7a:Mg (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13342 7y7a:Mg (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13343 7y7a:Mg (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13344 7y7a:Mh (4.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    13345 7y7a:Mh (4.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    13346 7y7a:Mh (4.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    13347 7y7a:Mh (4.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    13348 7y7a:Mh (4.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    13349 7y7a:Mh (4.3) BS06 PEB ? N/A A0A5J4YNU6 36922595
    13350 7y7a:Mh (4.3) BS09 PEB ? N/A A0A5J4YNU6 36922595
    13351 7y7a:Mh (4.3) BS10 PEB ? N/A A0A5J4YNU6 36922595
    13352 7y7a:Mi (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13353 7y7a:Mi (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13354 7y7a:Mi (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13355 7y7a:Mj (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13356 7y7a:Mk (4.3) BS01 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13357 7y7a:Mk (4.3) BS02 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13358 7y7a:Mk (4.3) BS03 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13359 7y7a:Mk (4.3) BS04 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13360 7y7a:Mk (4.3) BS05 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13361 7y7a:Mk (4.3) BS06 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    13362 7y7a:Ml (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13363 7y7a:Mn (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13364 7y7a:Mp (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13365 7y7a:Mp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13366 7y7a:Mp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13367 7y7a:Mp (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13368 7y7a:N1 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13369 7y7a:N2 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13370 7y7a:N2 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13371 7y7a:N2 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13372 7y7a:N3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13373 7y7a:N3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13374 7y7a:N3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13375 7y7a:N3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13376 7y7a:N4 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13377 7y7a:N5 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13378 7y7a:N5 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13379 7y7a:N5 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13380 7y7a:N5 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13381 7y7a:N6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13382 7y7a:N6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13383 7y7a:N6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13384 7y7a:N6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13385 7y7a:N8 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13386 7y7a:NA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13387 7y7a:NA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13388 7y7a:NA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13389 7y7a:NC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13390 7y7a:NC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13391 7y7a:NC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13392 7y7a:ND (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13393 7y7a:ND (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13394 7y7a:ND (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13395 7y7a:ND (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13396 7y7a:NF (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13397 7y7a:NF (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13398 7y7a:NF (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13399 7y7a:NH (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13400 7y7a:NH (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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