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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13001 7y7a:Jb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13002 7y7a:Jb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13003 7y7a:Jb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13004 7y7a:Jc (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13005 7y7a:Jc (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13006 7y7a:Jc (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13007 7y7a:Je (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13008 7y7a:Jf (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13009 7y7a:Jf (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13010 7y7a:Jf (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13011 7y7a:Jf (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13012 7y7a:Jg (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13013 7y7a:Jg (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13014 7y7a:Jg (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13015 7y7a:Jg (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13016 7y7a:Jh (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13017 7y7a:Jh (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13018 7y7a:Jh (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13019 7y7a:Ji (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13020 7y7a:Ji (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13021 7y7a:Ji (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13022 7y7a:Ji (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13023 7y7a:Jj (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13024 7y7a:Jk (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13025 7y7a:Jk (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13026 7y7a:Jk (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13027 7y7a:Jk (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13028 7y7a:Jl (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13029 7y7a:Jn (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13030 7y7a:Jp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13031 7y7a:Jp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13032 7y7a:Jp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13033 7y7a:Jp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13034 7y7a:K1 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13035 7y7a:K2 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13036 7y7a:K2 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13037 7y7a:K2 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13038 7y7a:K2 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13039 7y7a:K3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13040 7y7a:K3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13041 7y7a:K3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13042 7y7a:K3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13043 7y7a:K5 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13044 7y7a:K5 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13045 7y7a:K5 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13046 7y7a:K5 (4.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    13047 7y7a:K6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13048 7y7a:K6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13049 7y7a:K8 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13050 7y7a:KA (4.3) BS01 PEB ? N/A A0A5J4YJY8 36922595
    13051 7y7a:KA (4.3) BS02 PEB ? N/A A0A5J4YJY8 36922595
    13052 7y7a:KA (4.3) BS03 PEB ? N/A A0A5J4YJY8 36922595
    13053 7y7a:KA (4.3) BS04 PEB ? N/A A0A5J4YJY8 36922595
    13054 7y7a:KA (4.3) BS05 PEB ? N/A A0A5J4YJY8 36922595
    13055 7y7a:KA (4.3) BS06 PEB ? N/A A0A5J4YJY8 36922595
    13056 7y7a:KA (4.3) BS07 PEB ? N/A A0A5J4YJY8 36922595
    13057 7y7a:KA (4.3) BS08 PEB ? N/A A0A5J4YJY8 36922595
    13058 7y7a:KC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13059 7y7a:KC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13060 7y7a:KC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13061 7y7a:KC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13062 7y7a:KD (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13063 7y7a:KD (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13064 7y7a:KD (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13065 7y7a:KD (4.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    13066 7y7a:KF (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13067 7y7a:KF (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13068 7y7a:KF (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13069 7y7a:KF (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13070 7y7a:KH (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13071 7y7a:KH (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13072 7y7a:KH (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13073 7y7a:KJ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13074 7y7a:KJ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13075 7y7a:KK (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13076 7y7a:KL (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13077 7y7a:KL (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13078 7y7a:KM (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13079 7y7a:KM (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13080 7y7a:KM (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13081 7y7a:KM (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13082 7y7a:KQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13083 7y7a:KQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13084 7y7a:KR (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    13085 7y7a:KT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13086 7y7a:KT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13087 7y7a:KU (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13088 7y7a:KU (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13089 7y7a:KV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13090 7y7a:KV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13091 7y7a:KV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13092 7y7a:KV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13093 7y7a:KW (4.3) BS01 PEB ? N/A A0A5J4YJY8 36922595
    13094 7y7a:KW (4.3) BS02 PEB ? N/A A0A5J4YJY8 36922595
    13095 7y7a:KW (4.3) BS03 PEB ? N/A A0A5J4YJY8 36922595
    13096 7y7a:KW (4.3) BS04 PEB ? N/A A0A5J4YJY8 36922595
    13097 7y7a:KW (4.3) BS05 PEB ? N/A A0A5J4YJY8 36922595
    13098 7y7a:KW (4.3) BS06 PEB ? N/A A0A5J4YJY8 36922595
    13099 7y7a:KW (4.3) BS07 PEB ? N/A A0A5J4YJY8 36922595
    13100 7y7a:KW (4.3) BS08 PEB ? N/A A0A5J4YJY8 36922595
    13101 7y7a:Ka (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13102 7y7a:Ka (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13103 7y7a:Ka (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13104 7y7a:Ka (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13105 7y7a:Kb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13106 7y7a:Kb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13107 7y7a:Kc (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13108 7y7a:Kc (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13109 7y7a:Kc (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13110 7y7a:Kc (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13111 7y7a:Kf (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13112 7y7a:Kf (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13113 7y7a:Kf (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13114 7y7a:Kf (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13115 7y7a:Kg (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13116 7y7a:Kg (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13117 7y7a:Kg (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13118 7y7a:Kg (4.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    13119 7y7a:Kh (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13120 7y7a:Kh (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13121 7y7a:Kh (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13122 7y7a:Ki (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13123 7y7a:Ki (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13124 7y7a:Ki (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13125 7y7a:Ki (4.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    13126 7y7a:Kk (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13127 7y7a:Kk (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13128 7y7a:Kp (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13129 7y7a:Kp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13130 7y7a:Kp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13131 7y7a:Kp (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13132 7y7a:L1 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13133 7y7a:L2 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13134 7y7a:L2 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13135 7y7a:L2 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13136 7y7a:L2 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13137 7y7a:L3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13138 7y7a:L3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13139 7y7a:L3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13140 7y7a:L3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13141 7y7a:L4 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13142 7y7a:L5 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13143 7y7a:L5 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13144 7y7a:L5 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13145 7y7a:L5 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13146 7y7a:L6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13147 7y7a:L6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13148 7y7a:L6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13149 7y7a:L6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13150 7y7a:L8 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13151 7y7a:LA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13152 7y7a:LA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13153 7y7a:LA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13154 7y7a:LA (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13155 7y7a:LC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13156 7y7a:LC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13157 7y7a:LC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13158 7y7a:LC (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13159 7y7a:LD (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13160 7y7a:LD (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13161 7y7a:LD (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13162 7y7a:LD (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13163 7y7a:LF (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13164 7y7a:LF (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13165 7y7a:LF (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13166 7y7a:LF (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13167 7y7a:LH (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13168 7y7a:LH (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13169 7y7a:LH (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13170 7y7a:LH (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13171 7y7a:LH (4.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    13172 7y7a:LI (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13173 7y7a:LJ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13174 7y7a:LJ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13175 7y7a:LJ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13176 7y7a:LJ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13177 7y7a:LK (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13178 7y7a:LL (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13179 7y7a:LL (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13180 7y7a:LL (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13181 7y7a:LM (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    13182 7y7a:LM (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    13183 7y7a:LM (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    13184 7y7a:LM (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    13185 7y7a:LP (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13186 7y7a:LQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13187 7y7a:LQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13188 7y7a:LQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13189 7y7a:LQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13190 7y7a:LR (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13191 7y7a:LS (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    13192 7y7a:LT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13193 7y7a:LT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13194 7y7a:LT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13195 7y7a:LT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    13196 7y7a:LU (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13197 7y7a:LU (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    13198 7y7a:LU (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    13199 7y7a:LV (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    13200 7y7a:LV (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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