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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11801 7y5e:yK (3.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    11802 7y5e:yK (3.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    11803 7y5e:yK (3.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    11804 7y5e:yK (3.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    11805 7y5e:yK (3.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    11806 7y5e:z8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11807 7y5e:z8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11808 7y5e:z8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11809 7y5e:z8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11810 7y5e:zC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11811 7y5e:zC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11812 7y5e:zC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11813 7y5e:zC (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11814 7y5e:zF (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11815 7y5e:zF (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11816 7y5e:zF (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11817 7y5e:zF (3.3) BS05 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11818 7y5e:zK (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11819 7y5e:zK (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11820 7y5e:zK (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11821 7y5e:zK (3.3) BS05 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11822 7y5e:zK (3.3) BS06 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    11823 7y7a:1G (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11824 7y7a:1G (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11825 7y7a:1G (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11826 7y7a:1G (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11827 7y7a:1N (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11828 7y7a:1N (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11829 7y7a:1N (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11830 7y7a:1X (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11831 7y7a:1X (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11832 7y7a:1X (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11833 7y7a:1X (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11834 7y7a:1Y (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11835 7y7a:1Y (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11836 7y7a:1Y (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11837 7y7a:2B (4.3) BS01 PEB ? N/A A0A5J4YTV6 36922595
    11838 7y7a:2d (4.3) BS01 PEB ? N/A A0A5J4YTV6 36922595
    11839 7y7a:3B (4.3) BS01 PEB ? N/A A0A5J4Z2M2 36922595
    11840 7y7a:3d (4.3) BS01 PEB ? N/A A0A5J4Z2M2 36922595
    11841 7y7a:4B (4.3) BS01 PEB ? GO:0005615 ... A0A5J4ZA95 36922595
    11842 7y7a:4d (4.3) BS01 PEB ? GO:0005615 ... A0A5J4ZA95 36922595
    11843 7y7a:A1 (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11844 7y7a:A1 (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11845 7y7a:A1 (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11846 7y7a:A1 (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11847 7y7a:A1 (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11848 7y7a:A1 (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11849 7y7a:A1 (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11850 7y7a:A1 (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11851 7y7a:A1 (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11852 7y7a:A1 (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11853 7y7a:A1 (4.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    11854 7y7a:A2 (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11855 7y7a:A2 (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    11856 7y7a:A2 (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11857 7y7a:A2 (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11858 7y7a:A2 (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11859 7y7a:A2 (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11860 7y7a:A2 (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11861 7y7a:A2 (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11862 7y7a:A2 (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11863 7y7a:A3 (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    11864 7y7a:A3 (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    11865 7y7a:A3 (4.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    11866 7y7a:A3 (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    11867 7y7a:A3 (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    11868 7y7a:A3 (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    11869 7y7a:A3 (4.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    11870 7y7a:A3 (4.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    11871 7y7a:A3 (4.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    11872 7y7a:A4 (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11873 7y7a:A4 (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11874 7y7a:A4 (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11875 7y7a:A4 (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11876 7y7a:A4 (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11877 7y7a:A4 (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11878 7y7a:A4 (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11879 7y7a:A4 (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11880 7y7a:A4 (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11881 7y7a:A4 (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11882 7y7a:A5 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11883 7y7a:A5 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11884 7y7a:A6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11885 7y7a:A6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11886 7y7a:A8 (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11887 7y7a:A8 (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11888 7y7a:A8 (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11889 7y7a:A8 (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11890 7y7a:A8 (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11891 7y7a:A8 (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11892 7y7a:A8 (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11893 7y7a:A8 (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11894 7y7a:A8 (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11895 7y7a:A8 (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11896 7y7a:A8 (4.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    11897 7y7a:AA (4.3) BS01 PEB ? N/A A0A5J4YXP2 36922595
    11898 7y7a:AA (4.3) BS02 PEB ? N/A A0A5J4YXP2 36922595
    11899 7y7a:AC (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    11900 7y7a:AC (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    11901 7y7a:AC (4.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    11902 7y7a:AC (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    11903 7y7a:AC (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    11904 7y7a:AC (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    11905 7y7a:AC (4.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    11906 7y7a:AC (4.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    11907 7y7a:AC (4.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    11908 7y7a:AD (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11909 7y7a:AD (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11910 7y7a:AF (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11911 7y7a:AF (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    11912 7y7a:AF (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11913 7y7a:AF (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11914 7y7a:AF (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11915 7y7a:AF (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11916 7y7a:AF (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11917 7y7a:AF (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11918 7y7a:AF (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11919 7y7a:AH (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11920 7y7a:AH (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11921 7y7a:AH (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11922 7y7a:AI (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11923 7y7a:AI (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    11924 7y7a:AI (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11925 7y7a:AI (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11926 7y7a:AI (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11927 7y7a:AI (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11928 7y7a:AI (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11929 7y7a:AI (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11930 7y7a:AI (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11931 7y7a:AI (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11932 7y7a:AJ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11933 7y7a:AJ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11934 7y7a:AJ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11935 7y7a:AK (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11936 7y7a:AK (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11937 7y7a:AK (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11938 7y7a:AK (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11939 7y7a:AK (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11940 7y7a:AK (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11941 7y7a:AK (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11942 7y7a:AK (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11943 7y7a:AK (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11944 7y7a:AK (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11945 7y7a:AK (4.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    11946 7y7a:AL (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11947 7y7a:AL (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11948 7y7a:AL (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11949 7y7a:AM (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11950 7y7a:AM (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    11951 7y7a:AM (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11952 7y7a:AM (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11953 7y7a:AM (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11954 7y7a:AM (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11955 7y7a:AM (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11956 7y7a:AM (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11957 7y7a:AM (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11958 7y7a:AN (4.3) BS01 PEB N/A N/A N/A 36922595
    11959 7y7a:AN (4.3) BS02 PEB N/A N/A N/A 36922595
    11960 7y7a:AP (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11961 7y7a:AP (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    11962 7y7a:AP (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11963 7y7a:AP (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11964 7y7a:AP (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11965 7y7a:AP (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11966 7y7a:AP (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11967 7y7a:AP (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11968 7y7a:AP (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11969 7y7a:AP (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11970 7y7a:AQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11971 7y7a:AQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11972 7y7a:AR (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11973 7y7a:AR (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    11974 7y7a:AR (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11975 7y7a:AR (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11976 7y7a:AR (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11977 7y7a:AR (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11978 7y7a:AR (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11979 7y7a:AR (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11980 7y7a:AR (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11981 7y7a:AR (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11982 7y7a:AR (4.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    11983 7y7a:AS (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    11984 7y7a:AS (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    11985 7y7a:AS (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    11986 7y7a:AS (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    11987 7y7a:AS (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    11988 7y7a:AS (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    11989 7y7a:AS (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    11990 7y7a:AS (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    11991 7y7a:AS (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    11992 7y7a:AS (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    11993 7y7a:AT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11994 7y7a:AT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11995 7y7a:AU (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11996 7y7a:AU (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11997 7y7a:AU (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11998 7y7a:AV (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    11999 7y7a:AV (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    12000 7y7a:AV (4.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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