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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 5y6p:U5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1002 5y6p:U6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1003 5y6p:U6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1004 5y6p:U6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1005 5y6p:U7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1006 5y6p:U7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1007 5y6p:U8 (3.5) BS01 PEB N/A N/A N/A 29045394
    1008 5y6p:U8 (3.5) BS02 PEB N/A N/A N/A 29045394
    1009 5y6p:U8 (3.5) BS03 PEB N/A N/A N/A 29045394
    1010 5y6p:U8 (3.5) BS04 PEB N/A N/A N/A 29045394
    1011 5y6p:U8 (3.5) BS05 PEB N/A N/A N/A 29045394
    1012 5y6p:U8 (3.5) BS06 PEB N/A N/A N/A 29045394
    1013 5y6p:U8 (3.5) BS07 PEB N/A N/A N/A 29045394
    1014 5y6p:U8 (3.5) BS11 PEB N/A N/A N/A 29045394
    1015 5y6p:U8 (3.5) BS12 PEB N/A N/A N/A 29045394
    1016 5y6p:U8 (3.5) BS13 PEB N/A N/A N/A 29045394
    1017 5y6p:U9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1018 5y6p:U9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1019 5y6p:U9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1020 5y6p:U9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1021 5y6p:V2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1022 5y6p:V2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1023 5y6p:V2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1024 5y6p:V3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1025 5y6p:V3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1026 5y6p:V4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1027 5y6p:V4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1028 5y6p:V4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1029 5y6p:V5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1030 5y6p:V5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1031 5y6p:V6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1032 5y6p:V6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1033 5y6p:V6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1034 5y6p:V7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1035 5y6p:V7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1036 5y6p:V7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1037 5y6p:V8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1038 5y6p:V8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1039 5y6p:V8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1040 5y6p:V9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1041 5y6p:V9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1042 5y6p:W2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1043 5y6p:W2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1044 5y6p:W2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1045 5y6p:W3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1046 5y6p:W3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1047 5y6p:W3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1048 5y6p:W3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1049 5y6p:W4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1050 5y6p:W4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1051 5y6p:W4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1052 5y6p:W5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1053 5y6p:W5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1054 5y6p:W5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1055 5y6p:W5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1056 5y6p:W6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1057 5y6p:W6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1058 5y6p:W7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1059 5y6p:W7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1060 5y6p:W8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1061 5y6p:W8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1062 5y6p:W8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1063 5y6p:W9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1064 5y6p:W9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1065 5y6p:W9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1066 5y6p:X2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1067 5y6p:X2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1068 5y6p:X2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1069 5y6p:X3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1070 5y6p:X3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1071 5y6p:X3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1072 5y6p:X4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1073 5y6p:X4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1074 5y6p:X4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1075 5y6p:X5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1076 5y6p:X5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1077 5y6p:X5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1078 5y6p:X5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1079 5y6p:X5 (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    1080 5y6p:X5 (3.5) BS06 PEB N/A GO:0015979 ... N/A 29045394
    1081 5y6p:X5 (3.5) BS07 PEB N/A GO:0015979 ... N/A 29045394
    1082 5y6p:X6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1083 5y6p:X6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1084 5y6p:X6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1085 5y6p:X7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1086 5y6p:X7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1087 5y6p:X7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1088 5y6p:X8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1089 5y6p:X8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1090 5y6p:X8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1091 5y6p:X9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1092 5y6p:X9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1093 5y6p:X9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1094 5y6p:X9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1095 5y6p:X9 (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    1096 5y6p:Y2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1097 5y6p:Y2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1098 5y6p:Y3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1099 5y6p:Y3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1100 5y6p:Y4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1101 5y6p:Y4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1102 5y6p:Y5 (3.5) BS01 PEB N/A N/A N/A 29045394
    1103 5y6p:Y5 (3.5) BS02 PEB N/A N/A N/A 29045394
    1104 5y6p:Y5 (3.5) BS03 PEB N/A N/A N/A 29045394
    1105 5y6p:Y5 (3.5) BS04 PEB N/A N/A N/A 29045394
    1106 5y6p:Y5 (3.5) BS05 PEB N/A N/A N/A 29045394
    1107 5y6p:Y5 (3.5) BS06 PEB N/A N/A N/A 29045394
    1108 5y6p:Y5 (3.5) BS07 PEB N/A N/A N/A 29045394
    1109 5y6p:Y5 (3.5) BS11 PEB N/A N/A N/A 29045394
    1110 5y6p:Y6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1111 5y6p:Y6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1112 5y6p:Y6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1113 5y6p:Y7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1114 5y6p:Y7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1115 5y6p:Y7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1116 5y6p:Y8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1117 5y6p:Y8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1118 5y6p:Y9 (3.5) BS01 PEB N/A N/A N/A 29045394
    1119 5y6p:Y9 (3.5) BS02 PEB N/A N/A N/A 29045394
    1120 5y6p:Y9 (3.5) BS03 PEB N/A N/A N/A 29045394
    1121 5y6p:Y9 (3.5) BS04 PEB N/A N/A N/A 29045394
    1122 5y6p:Y9 (3.5) BS05 PEB N/A N/A N/A 29045394
    1123 5y6p:Z2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1124 5y6p:Z2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1125 5y6p:Z2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1126 5y6p:Z3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1127 5y6p:Z3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1128 5y6p:Z3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1129 5y6p:Z4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1130 5y6p:Z4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1131 5y6p:Z5 (3.5) BS01 PEB N/A N/A N/A 29045394
    1132 5y6p:Z5 (3.5) BS02 PEB N/A N/A N/A 29045394
    1133 5y6p:Z5 (3.5) BS03 PEB N/A N/A N/A 29045394
    1134 5y6p:Z5 (3.5) BS04 PEB N/A N/A N/A 29045394
    1135 5y6p:Z5 (3.5) BS05 PEB N/A N/A N/A 29045394
    1136 5y6p:Z5 (3.5) BS06 PEB N/A N/A N/A 29045394
    1137 5y6p:Z5 (3.5) BS07 PEB N/A N/A N/A 29045394
    1138 5y6p:Z5 (3.5) BS08 PEB N/A N/A N/A 29045394
    1139 5y6p:Z6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1140 5y6p:Z6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1141 5y6p:Z6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1142 5y6p:Z7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1143 5y6p:Z7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1144 5y6p:Z7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1145 5y6p:Z8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1146 5y6p:Z8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1147 5y6p:Z9 (3.5) BS01 PEB N/A N/A N/A 29045394
    1148 5y6p:Z9 (3.5) BS02 PEB N/A N/A N/A 29045394
    1149 5y6p:Z9 (3.5) BS03 PEB N/A N/A N/A 29045394
    1150 5y6p:Z9 (3.5) BS04 PEB N/A N/A N/A 29045394
    1151 5y6p:Z9 (3.5) BS05 PEB N/A N/A N/A 29045394
    1152 5y6p:Z9 (3.5) BS06 PEB N/A N/A N/A 29045394
    1153 5y6p:Z9 (3.5) BS07 PEB N/A N/A N/A 29045394
    1154 5y6p:Z9 (3.5) BS11 PEB N/A N/A N/A 29045394
    1155 5y6p:Z9 (3.5) BS12 PEB N/A N/A N/A 29045394
    1156 5y6p:Z9 (3.5) BS13 PEB N/A N/A N/A 29045394
    1157 5y6p:a3 (3.5) BS01 PEB N/A N/A N/A 29045394
    1158 5y6p:a3 (3.5) BS02 PEB N/A N/A N/A 29045394
    1159 5y6p:a3 (3.5) BS03 PEB N/A N/A N/A 29045394
    1160 5y6p:a3 (3.5) BS07 PEB N/A N/A N/A 29045394
    1161 5y6p:a3 (3.5) BS08 PEB N/A N/A N/A 29045394
    1162 5y6p:a3 (3.5) BS09 PEB N/A N/A N/A 29045394
    1163 5y6p:a3 (3.5) BS10 PEB N/A N/A N/A 29045394
    1164 5y6p:a3 (3.5) BS11 PEB N/A N/A N/A 29045394
    1165 5y6p:a3 (3.5) BS12 PEB N/A N/A N/A 29045394
    1166 5y6p:a3 (3.5) BS13 PEB N/A N/A N/A 29045394
    1167 5y6p:a4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1168 5y6p:a5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1169 5y6p:a5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1170 5y6p:a6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1171 5y6p:a6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1172 5y6p:a6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1173 5y6p:a7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1174 5y6p:a7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1175 5y6p:a7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1176 5y6p:a8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1177 5y6p:a8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1178 5y6p:a8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1179 5y6p:a8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1180 5y6p:a9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1181 5y6p:a9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1182 5y6p:a9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1183 5y6p:a9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1184 5y6p:aA (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1185 5y6p:aA (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1186 5y6p:aA (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    1187 5y6p:aB (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1188 5y6p:aB (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1189 5y6p:aB (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1190 5y6p:aC (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1191 5y6p:aC (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1192 5y6p:aD (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1193 5y6p:aD (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1194 5y6p:aE (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1195 5y6p:aE (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1196 5y6p:aF (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1197 5y6p:aF (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    1198 5y6p:aF (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    1199 5y6p:aG (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1200 5y6p:aG (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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