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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11601 7y5e:mJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11602 7y5e:mJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11603 7y5e:mK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11604 7y5e:mK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11605 7y5e:mK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11606 7y5e:mM (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11607 7y5e:mM (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11608 7y5e:mM (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11609 7y5e:mO (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11610 7y5e:mO (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11611 7y5e:mO (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11612 7y5e:nF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11613 7y5e:nF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11614 7y5e:nF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11615 7y5e:nF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11616 7y5e:nK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11617 7y5e:nK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11618 7y5e:nK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11619 7y5e:nK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11620 7y5e:oF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11621 7y5e:oF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11622 7y5e:oF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11623 7y5e:oF (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11624 7y5e:oK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11625 7y5e:oK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11626 7y5e:oK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11627 7y5e:oK (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11628 7y5e:p8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11629 7y5e:p8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11630 7y5e:p8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11631 7y5e:p8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11632 7y5e:pC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11633 7y5e:pC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11634 7y5e:pC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11635 7y5e:pC (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11636 7y5e:pF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11637 7y5e:pF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11638 7y5e:pF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11639 7y5e:pF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11640 7y5e:pK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11641 7y5e:pK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11642 7y5e:pK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11643 7y5e:pK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11644 7y5e:q8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11645 7y5e:q8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11646 7y5e:q8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11647 7y5e:q8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11648 7y5e:qC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11649 7y5e:qC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11650 7y5e:qC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11651 7y5e:qC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11652 7y5e:qF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11653 7y5e:qF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11654 7y5e:qF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11655 7y5e:qF (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11656 7y5e:qK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11657 7y5e:qK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11658 7y5e:qK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11659 7y5e:qK (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11660 7y5e:r8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11661 7y5e:r8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11662 7y5e:r8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11663 7y5e:rC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11664 7y5e:rC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11665 7y5e:rC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11666 7y5e:rF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11667 7y5e:rF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11668 7y5e:rF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11669 7y5e:rF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11670 7y5e:rK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11671 7y5e:rK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11672 7y5e:rK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11673 7y5e:rK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11674 7y5e:s8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11675 7y5e:s8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11676 7y5e:s8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11677 7y5e:s8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11678 7y5e:sC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11679 7y5e:sC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11680 7y5e:sC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11681 7y5e:sC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11682 7y5e:sF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11683 7y5e:sF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11684 7y5e:sF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11685 7y5e:sK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11686 7y5e:sK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11687 7y5e:sK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11688 7y5e:t8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11689 7y5e:t8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11690 7y5e:t8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11691 7y5e:tC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11692 7y5e:tC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11693 7y5e:tC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11694 7y5e:tF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11695 7y5e:tF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11696 7y5e:tF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11697 7y5e:tF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11698 7y5e:tK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11699 7y5e:tK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11700 7y5e:tK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11701 7y5e:tK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11702 7y5e:u8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11703 7y5e:u8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11704 7y5e:u8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11705 7y5e:u8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11706 7y5e:uC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11707 7y5e:uC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11708 7y5e:uC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11709 7y5e:uC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11710 7y5e:uF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11711 7y5e:uF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11712 7y5e:uF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11713 7y5e:uK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11714 7y5e:uK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11715 7y5e:uK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11716 7y5e:v8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11717 7y5e:v8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11718 7y5e:v8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11719 7y5e:v8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11720 7y5e:vC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11721 7y5e:vC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11722 7y5e:vC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11723 7y5e:vC (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11724 7y5e:vF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11725 7y5e:vF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11726 7y5e:vF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11727 7y5e:vF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11728 7y5e:vK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11729 7y5e:vK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11730 7y5e:vK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11731 7y5e:vK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11732 7y5e:w8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11733 7y5e:w8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11734 7y5e:w8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11735 7y5e:w8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11736 7y5e:w8 (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    11737 7y5e:wC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11738 7y5e:wC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11739 7y5e:wC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11740 7y5e:wC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11741 7y5e:wC (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    11742 7y5e:wF (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    11743 7y5e:wF (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    11744 7y5e:wF (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    11745 7y5e:wF (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    11746 7y5e:wF (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    11747 7y5e:wF (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    11748 7y5e:wF (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    11749 7y5e:wF (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    11750 7y5e:wF (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    11751 7y5e:wK (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    11752 7y5e:wK (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    11753 7y5e:wK (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    11754 7y5e:wK (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    11755 7y5e:wK (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    11756 7y5e:wK (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    11757 7y5e:wK (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    11758 7y5e:wK (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    11759 7y5e:wK (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    11760 7y5e:x8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11761 7y5e:x8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11762 7y5e:x8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11763 7y5e:x8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11764 7y5e:xC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11765 7y5e:xC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11766 7y5e:xC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11767 7y5e:xC (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11768 7y5e:xF (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    11769 7y5e:xF (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    11770 7y5e:xF (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    11771 7y5e:xF (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    11772 7y5e:xF (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    11773 7y5e:xF (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    11774 7y5e:xF (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    11775 7y5e:xF (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    11776 7y5e:xK (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    11777 7y5e:xK (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    11778 7y5e:xK (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    11779 7y5e:xK (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    11780 7y5e:xK (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    11781 7y5e:xK (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    11782 7y5e:xK (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    11783 7y5e:xK (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    11784 7y5e:y8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11785 7y5e:y8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11786 7y5e:y8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11787 7y5e:y8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11788 7y5e:yC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11789 7y5e:yC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11790 7y5e:yC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11791 7y5e:yC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11792 7y5e:yF (3.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    11793 7y5e:yF (3.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    11794 7y5e:yF (3.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    11795 7y5e:yF (3.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    11796 7y5e:yF (3.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    11797 7y5e:yF (3.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    11798 7y5e:yF (3.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    11799 7y5e:yK (3.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    11800 7y5e:yK (3.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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