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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11401 7y5e:gO (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11402 7y5e:h1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11403 7y5e:h1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11404 7y5e:h1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11405 7y5e:h4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11406 7y5e:h4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11407 7y5e:h4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11408 7y5e:hB (3.3) BS01 PEB ? N/A A0A5J4Z027 36922595
    11409 7y5e:hB (3.3) BS02 PEB ? N/A A0A5J4Z027 36922595
    11410 7y5e:hB (3.3) BS03 PEB ? N/A A0A5J4Z027 36922595
    11411 7y5e:hE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11412 7y5e:hE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11413 7y5e:hF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11414 7y5e:hF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11415 7y5e:hF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11416 7y5e:hF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11417 7y5e:hG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11418 7y5e:hG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11419 7y5e:hH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11420 7y5e:hH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11421 7y5e:hH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11422 7y5e:hJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11423 7y5e:hJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11424 7y5e:hJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11425 7y5e:hJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11426 7y5e:hK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11427 7y5e:hK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11428 7y5e:hK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11429 7y5e:hK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11430 7y5e:hM (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11431 7y5e:hM (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11432 7y5e:hM (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11433 7y5e:hM (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11434 7y5e:hO (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11435 7y5e:hO (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11436 7y5e:hO (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11437 7y5e:i1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11438 7y5e:i1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11439 7y5e:i1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11440 7y5e:i1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11441 7y5e:i4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11442 7y5e:i4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11443 7y5e:i4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11444 7y5e:iE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11445 7y5e:iE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11446 7y5e:iE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11447 7y5e:iE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11448 7y5e:iF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11449 7y5e:iF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11450 7y5e:iF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11451 7y5e:iG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11452 7y5e:iG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11453 7y5e:iG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11454 7y5e:iG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11455 7y5e:iH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11456 7y5e:iH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11457 7y5e:iH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11458 7y5e:iH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11459 7y5e:iJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11460 7y5e:iJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11461 7y5e:iJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11462 7y5e:iJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11463 7y5e:iK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11464 7y5e:iK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11465 7y5e:iK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11466 7y5e:iM (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11467 7y5e:iM (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11468 7y5e:iM (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11469 7y5e:iM (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11470 7y5e:iO (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11471 7y5e:iO (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11472 7y5e:iO (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11473 7y5e:j1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11474 7y5e:j1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11475 7y5e:j1 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11476 7y5e:j4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11477 7y5e:j4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11478 7y5e:j4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11479 7y5e:j4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11480 7y5e:jE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11481 7y5e:jE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11482 7y5e:jE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11483 7y5e:jF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11484 7y5e:jF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11485 7y5e:jF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11486 7y5e:jF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11487 7y5e:jG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11488 7y5e:jG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11489 7y5e:jG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11490 7y5e:jH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11491 7y5e:jH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11492 7y5e:jH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11493 7y5e:jJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11494 7y5e:jJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11495 7y5e:jJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11496 7y5e:jJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11497 7y5e:jK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11498 7y5e:jK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11499 7y5e:jK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11500 7y5e:jK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11501 7y5e:jM (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11502 7y5e:jM (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11503 7y5e:jM (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11504 7y5e:jO (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11505 7y5e:jO (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11506 7y5e:jO (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11507 7y5e:jO (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11508 7y5e:k1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11509 7y5e:k1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11510 7y5e:k1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11511 7y5e:k1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11512 7y5e:k4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11513 7y5e:k4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11514 7y5e:k4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11515 7y5e:kE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11516 7y5e:kE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11517 7y5e:kE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11518 7y5e:kE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11519 7y5e:kF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11520 7y5e:kF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11521 7y5e:kF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11522 7y5e:kG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11523 7y5e:kG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11524 7y5e:kG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11525 7y5e:kG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11526 7y5e:kH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11527 7y5e:kH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11528 7y5e:kH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11529 7y5e:kH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11530 7y5e:kJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11531 7y5e:kJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11532 7y5e:kJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11533 7y5e:kJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11534 7y5e:kK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11535 7y5e:kK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11536 7y5e:kK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11537 7y5e:kM (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11538 7y5e:kM (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11539 7y5e:kM (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11540 7y5e:kM (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11541 7y5e:kO (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11542 7y5e:kO (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11543 7y5e:kO (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11544 7y5e:l1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11545 7y5e:l1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11546 7y5e:l1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11547 7y5e:l4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11548 7y5e:l4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11549 7y5e:l4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11550 7y5e:lE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11551 7y5e:lE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11552 7y5e:lE (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11553 7y5e:lF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11554 7y5e:lF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11555 7y5e:lF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11556 7y5e:lF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11557 7y5e:lG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11558 7y5e:lG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11559 7y5e:lG (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11560 7y5e:lH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11561 7y5e:lH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11562 7y5e:lH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11563 7y5e:lJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11564 7y5e:lJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11565 7y5e:lJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11566 7y5e:lK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11567 7y5e:lK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11568 7y5e:lK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11569 7y5e:lK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11570 7y5e:lM (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11571 7y5e:lM (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11572 7y5e:lM (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11573 7y5e:lM (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    11574 7y5e:lM (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    11575 7y5e:lO (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11576 7y5e:lO (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11577 7y5e:lO (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11578 7y5e:m1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11579 7y5e:m1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11580 7y5e:m1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11581 7y5e:m1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11582 7y5e:m4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11583 7y5e:m4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11584 7y5e:m4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11585 7y5e:mE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11586 7y5e:mE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11587 7y5e:mE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11588 7y5e:mE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11589 7y5e:mF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    11590 7y5e:mF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    11591 7y5e:mF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    11592 7y5e:mG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11593 7y5e:mG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11594 7y5e:mG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11595 7y5e:mG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11596 7y5e:mH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    11597 7y5e:mH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    11598 7y5e:mH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    11599 7y5e:mH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    11600 7y5e:mJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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