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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10401 7y5e:PM (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10402 7y5e:PM (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10403 7y5e:PO (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10404 7y5e:PO (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10405 7y5e:PO (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10406 7y5e:PP (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10407 7y5e:PP (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10408 7y5e:PP (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10409 7y5e:PP (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10410 7y5e:PQ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10411 7y5e:PQ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10412 7y5e:PQ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10413 7y5e:Q1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10414 7y5e:Q1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10415 7y5e:Q1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10416 7y5e:Q4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10417 7y5e:Q4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10418 7y5e:Q4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10419 7y5e:Q4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10420 7y5e:Q5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10421 7y5e:Q5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10422 7y5e:Q5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10423 7y5e:Q7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10424 7y5e:Q7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10425 7y5e:Q7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10426 7y5e:Q7 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10427 7y5e:Q9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10428 7y5e:Q9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10429 7y5e:Q9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10430 7y5e:QA (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10431 7y5e:QA (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10432 7y5e:QA (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10433 7y5e:QA (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10434 7y5e:QB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10435 7y5e:QB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10436 7y5e:QB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10437 7y5e:QB (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10438 7y5e:QD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10439 7y5e:QD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10440 7y5e:QD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10441 7y5e:QD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10442 7y5e:QE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10443 7y5e:QE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10444 7y5e:QE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10445 7y5e:QF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10446 7y5e:QF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10447 7y5e:QF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10448 7y5e:QG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10449 7y5e:QG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10450 7y5e:QG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10451 7y5e:QH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10452 7y5e:QH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10453 7y5e:QH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10454 7y5e:QI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10455 7y5e:QI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10456 7y5e:QI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10457 7y5e:QI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10458 7y5e:QJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10459 7y5e:QJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10460 7y5e:QJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10461 7y5e:QJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10462 7y5e:QK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10463 7y5e:QK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10464 7y5e:QK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10465 7y5e:QM (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10466 7y5e:QM (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10467 7y5e:QM (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10468 7y5e:QM (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10469 7y5e:QO (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10470 7y5e:QO (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10471 7y5e:QO (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10472 7y5e:QO (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10473 7y5e:QP (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10474 7y5e:QP (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10475 7y5e:QP (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10476 7y5e:QQ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10477 7y5e:QQ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10478 7y5e:QQ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10479 7y5e:QQ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10480 7y5e:R1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10481 7y5e:R1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10482 7y5e:R1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10483 7y5e:R1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10484 7y5e:R4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10485 7y5e:R4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10486 7y5e:R4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10487 7y5e:R4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10488 7y5e:R5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10489 7y5e:R5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10490 7y5e:R5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10491 7y5e:R5 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10492 7y5e:R5 (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    10493 7y5e:R7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10494 7y5e:R7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10495 7y5e:R7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10496 7y5e:R9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10497 7y5e:R9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10498 7y5e:R9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10499 7y5e:R9 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10500 7y5e:RA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10501 7y5e:RA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10502 7y5e:RA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10503 7y5e:RB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10504 7y5e:RB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10505 7y5e:RB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10506 7y5e:RD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10507 7y5e:RD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10508 7y5e:RD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10509 7y5e:RE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10510 7y5e:RE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10511 7y5e:RE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10512 7y5e:RE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10513 7y5e:RF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10514 7y5e:RF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10515 7y5e:RF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10516 7y5e:RF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10517 7y5e:RG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10518 7y5e:RG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10519 7y5e:RG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10520 7y5e:RG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10521 7y5e:RH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10522 7y5e:RH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10523 7y5e:RH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10524 7y5e:RH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10525 7y5e:RI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10526 7y5e:RI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10527 7y5e:RI (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10528 7y5e:RJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10529 7y5e:RJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10530 7y5e:RJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10531 7y5e:RJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10532 7y5e:RK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10533 7y5e:RK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10534 7y5e:RK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10535 7y5e:RK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10536 7y5e:RM (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10537 7y5e:RM (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10538 7y5e:RM (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10539 7y5e:RM (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10540 7y5e:RO (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10541 7y5e:RO (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10542 7y5e:RO (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10543 7y5e:RO (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10544 7y5e:RP (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10545 7y5e:RP (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10546 7y5e:RP (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10547 7y5e:RP (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10548 7y5e:RQ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10549 7y5e:RQ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10550 7y5e:RQ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10551 7y5e:S1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10552 7y5e:S1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10553 7y5e:S1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10554 7y5e:S4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10555 7y5e:S4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10556 7y5e:S4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10557 7y5e:S4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10558 7y5e:S5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10559 7y5e:S5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10560 7y5e:S5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10561 7y5e:S7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10562 7y5e:S7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10563 7y5e:S7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10564 7y5e:S9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10565 7y5e:S9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10566 7y5e:S9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10567 7y5e:SA (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10568 7y5e:SA (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10569 7y5e:SA (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10570 7y5e:SB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10571 7y5e:SB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10572 7y5e:SB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10573 7y5e:SD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10574 7y5e:SD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10575 7y5e:SD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10576 7y5e:SD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10577 7y5e:SE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10578 7y5e:SE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10579 7y5e:SE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10580 7y5e:SF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10581 7y5e:SF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10582 7y5e:SF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10583 7y5e:SG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10584 7y5e:SG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10585 7y5e:SG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10586 7y5e:SH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10587 7y5e:SH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10588 7y5e:SH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10589 7y5e:SI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10590 7y5e:SI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10591 7y5e:SI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10592 7y5e:SJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10593 7y5e:SJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10594 7y5e:SJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10595 7y5e:SJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10596 7y5e:SK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10597 7y5e:SK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10598 7y5e:SK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10599 7y5e:SM (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10600 7y5e:SM (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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