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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10001 7y5e:IM (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10002 7y5e:IM (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10003 7y5e:IM (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10004 7y5e:IO (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    10005 7y5e:IP (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10006 7y5e:IP (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10007 7y5e:IP (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10008 7y5e:IQ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10009 7y5e:IQ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10010 7y5e:IQ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10011 7y5e:IQ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10012 7y5e:J1 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10013 7y5e:J4 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10014 7y5e:J5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10015 7y5e:J5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10016 7y5e:J5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10017 7y5e:J7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10018 7y5e:J7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10019 7y5e:J7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10020 7y5e:J7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10021 7y5e:J9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10022 7y5e:J9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10023 7y5e:J9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10024 7y5e:J9 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10025 7y5e:JA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10026 7y5e:JA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10027 7y5e:JA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10028 7y5e:JA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10029 7y5e:JB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10030 7y5e:JB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10031 7y5e:JD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10032 7y5e:JD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10033 7y5e:JD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10034 7y5e:JE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10035 7y5e:JF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10036 7y5e:JF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10037 7y5e:JF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10038 7y5e:JF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10039 7y5e:JG (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10040 7y5e:JH (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10041 7y5e:JI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10042 7y5e:JI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10043 7y5e:JI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10044 7y5e:JI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10045 7y5e:JJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10046 7y5e:JJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10047 7y5e:JJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10048 7y5e:JJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10049 7y5e:JK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10050 7y5e:JK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10051 7y5e:JK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10052 7y5e:JK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10053 7y5e:JM (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10054 7y5e:JM (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10055 7y5e:JM (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10056 7y5e:JM (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10057 7y5e:JM (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    10058 7y5e:JO (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10059 7y5e:JP (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10060 7y5e:JP (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10061 7y5e:JP (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10062 7y5e:JP (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10063 7y5e:JQ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10064 7y5e:JQ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10065 7y5e:JQ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10066 7y5e:K5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10067 7y5e:K5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10068 7y5e:K5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10069 7y5e:K7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10070 7y5e:K7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10071 7y5e:K7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10072 7y5e:K7 (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    10073 7y5e:K9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10074 7y5e:K9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10075 7y5e:K9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10076 7y5e:K9 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10077 7y5e:KA (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10078 7y5e:KA (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10079 7y5e:KA (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10080 7y5e:KA (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    10081 7y5e:KB (3.3) BS01 PEB ? N/A A0A5J4YJY8 36922595
    10082 7y5e:KB (3.3) BS02 PEB ? N/A A0A5J4YJY8 36922595
    10083 7y5e:KB (3.3) BS03 PEB ? N/A A0A5J4YJY8 36922595
    10084 7y5e:KB (3.3) BS04 PEB ? N/A A0A5J4YJY8 36922595
    10085 7y5e:KB (3.3) BS05 PEB ? N/A A0A5J4YJY8 36922595
    10086 7y5e:KB (3.3) BS06 PEB ? N/A A0A5J4YJY8 36922595
    10087 7y5e:KD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10088 7y5e:KD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10089 7y5e:KD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10090 7y5e:KD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10091 7y5e:KE (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    10092 7y5e:KF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10093 7y5e:KF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10094 7y5e:KG (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    10095 7y5e:KI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10096 7y5e:KI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10097 7y5e:KJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10098 7y5e:KJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10099 7y5e:KJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10100 7y5e:KJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10101 7y5e:KK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10102 7y5e:KK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10103 7y5e:KM (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10104 7y5e:KM (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10105 7y5e:KM (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10106 7y5e:KM (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10107 7y5e:KP (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10108 7y5e:KP (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10109 7y5e:KQ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10110 7y5e:KQ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10111 7y5e:KQ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10112 7y5e:KQ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10113 7y5e:L1 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10114 7y5e:L4 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10115 7y5e:L5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10116 7y5e:L5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10117 7y5e:L5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10118 7y5e:L5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10119 7y5e:L7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10120 7y5e:L7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10121 7y5e:L7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10122 7y5e:L7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10123 7y5e:L9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10124 7y5e:L9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10125 7y5e:L9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10126 7y5e:LA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10127 7y5e:LA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10128 7y5e:LA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10129 7y5e:LA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10130 7y5e:LB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10131 7y5e:LB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10132 7y5e:LB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10133 7y5e:LB (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10134 7y5e:LD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10135 7y5e:LD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10136 7y5e:LD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10137 7y5e:LD (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10138 7y5e:LE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10139 7y5e:LF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10140 7y5e:LF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10141 7y5e:LF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10142 7y5e:LF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10143 7y5e:LG (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10144 7y5e:LH (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10145 7y5e:LI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10146 7y5e:LI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10147 7y5e:LI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10148 7y5e:LI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10149 7y5e:LJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10150 7y5e:LJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10151 7y5e:LJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10152 7y5e:LJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10153 7y5e:LK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10154 7y5e:LK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10155 7y5e:LK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10156 7y5e:LK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10157 7y5e:LM (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10158 7y5e:LM (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10159 7y5e:LM (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10160 7y5e:LM (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10161 7y5e:LO (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    10162 7y5e:LP (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10163 7y5e:LP (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10164 7y5e:LP (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10165 7y5e:LQ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10166 7y5e:LQ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10167 7y5e:LQ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10168 7y5e:LQ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    10169 7y5e:M1 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    10170 7y5e:M4 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    10171 7y5e:M5 (3.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    10172 7y5e:M5 (3.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    10173 7y5e:M5 (3.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    10174 7y5e:M5 (3.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    10175 7y5e:M5 (3.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    10176 7y5e:M5 (3.3) BS06 PEB ? N/A A0A5J4YNU6 36922595
    10177 7y5e:M5 (3.3) BS09 PEB ? N/A A0A5J4YNU6 36922595
    10178 7y5e:M5 (3.3) BS10 PEB ? N/A A0A5J4YNU6 36922595
    10179 7y5e:M7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10180 7y5e:M7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10181 7y5e:M7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10182 7y5e:M9 (3.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    10183 7y5e:M9 (3.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    10184 7y5e:M9 (3.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    10185 7y5e:M9 (3.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    10186 7y5e:M9 (3.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    10187 7y5e:M9 (3.3) BS07 PEB ? N/A A0A5J4YNU6 36922595
    10188 7y5e:M9 (3.3) BS08 PEB ? N/A A0A5J4YNU6 36922595
    10189 7y5e:MA (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    10190 7y5e:MA (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    10191 7y5e:MA (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    10192 7y5e:MB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10193 7y5e:MB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10194 7y5e:MB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10195 7y5e:MD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    10196 7y5e:MD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    10197 7y5e:MD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    10198 7y5e:MD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    10199 7y5e:ME (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    10200 7y5e:MF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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