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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 5y6p:L4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    802 5y6p:L4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    803 5y6p:L5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    804 5y6p:L5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    805 5y6p:L6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    806 5y6p:L6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    807 5y6p:L6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    808 5y6p:L7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    809 5y6p:L7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    810 5y6p:L8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    811 5y6p:L8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    812 5y6p:L9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    813 5y6p:L9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    814 5y6p:L9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    815 5y6p:M2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    816 5y6p:M2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    817 5y6p:M3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    818 5y6p:M3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    819 5y6p:M4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    820 5y6p:M4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    821 5y6p:M4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    822 5y6p:M4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    823 5y6p:M5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    824 5y6p:M5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    825 5y6p:M5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    826 5y6p:M5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    827 5y6p:M6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    828 5y6p:M6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    829 5y6p:M6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    830 5y6p:M6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    831 5y6p:M7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    832 5y6p:M7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    833 5y6p:M7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    834 5y6p:M7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    835 5y6p:M8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    836 5y6p:M8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    837 5y6p:M8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    838 5y6p:M9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    839 5y6p:M9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    840 5y6p:N2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    841 5y6p:N2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    842 5y6p:N3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    843 5y6p:N3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    844 5y6p:N4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    845 5y6p:N4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    846 5y6p:N4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    847 5y6p:N5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    848 5y6p:N5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    849 5y6p:N6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    850 5y6p:N6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    851 5y6p:N6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    852 5y6p:N7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    853 5y6p:N7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    854 5y6p:N8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    855 5y6p:N8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    856 5y6p:N9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    857 5y6p:N9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    858 5y6p:O2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    859 5y6p:O2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    860 5y6p:O2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    861 5y6p:O3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    862 5y6p:O3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    863 5y6p:O3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    864 5y6p:O4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    865 5y6p:O4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    866 5y6p:O4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    867 5y6p:O5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    868 5y6p:O5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    869 5y6p:O6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    870 5y6p:O6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    871 5y6p:O6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    872 5y6p:O7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    873 5y6p:O7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    874 5y6p:O8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    875 5y6p:O8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    876 5y6p:O8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    877 5y6p:O9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    878 5y6p:O9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    879 5y6p:P2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    880 5y6p:P2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    881 5y6p:P2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    882 5y6p:P3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    883 5y6p:P3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    884 5y6p:P3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    885 5y6p:P4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    886 5y6p:P4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    887 5y6p:P5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    888 5y6p:P5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    889 5y6p:P6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    890 5y6p:P6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    891 5y6p:P7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    892 5y6p:P7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    893 5y6p:P7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    894 5y6p:P8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    895 5y6p:P8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    896 5y6p:P8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    897 5y6p:P8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    898 5y6p:P9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    899 5y6p:P9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    900 5y6p:Q2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    901 5y6p:Q2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    902 5y6p:Q2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    903 5y6p:Q3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    904 5y6p:Q3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    905 5y6p:Q4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    906 5y6p:Q4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    907 5y6p:Q4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    908 5y6p:Q5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    909 5y6p:Q5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    910 5y6p:Q5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    911 5y6p:Q6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    912 5y6p:Q6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    913 5y6p:Q7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    914 5y6p:Q7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    915 5y6p:Q8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    916 5y6p:Q8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    917 5y6p:Q8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    918 5y6p:Q9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    919 5y6p:Q9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    920 5y6p:R2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    921 5y6p:R2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    922 5y6p:R2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    923 5y6p:R3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    924 5y6p:R3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    925 5y6p:R3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    926 5y6p:R4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    927 5y6p:R4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    928 5y6p:R5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    929 5y6p:R5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    930 5y6p:R5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    931 5y6p:R6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    932 5y6p:R6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    933 5y6p:R7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    934 5y6p:R7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    935 5y6p:R8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    936 5y6p:R8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    937 5y6p:R8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    938 5y6p:R8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    939 5y6p:R9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    940 5y6p:R9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    941 5y6p:R9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    942 5y6p:S2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    943 5y6p:S2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    944 5y6p:S2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    945 5y6p:S3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    946 5y6p:S3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    947 5y6p:S4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    948 5y6p:S4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    949 5y6p:S5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    950 5y6p:S5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    951 5y6p:S5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    952 5y6p:S6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    953 5y6p:S6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    954 5y6p:S6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    955 5y6p:S7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    956 5y6p:S7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    957 5y6p:S7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    958 5y6p:S8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    959 5y6p:S8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    960 5y6p:S8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    961 5y6p:S8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    962 5y6p:S8 (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    963 5y6p:S8 (3.5) BS06 PEB N/A GO:0015979 ... N/A 29045394
    964 5y6p:S9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    965 5y6p:S9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    966 5y6p:T2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    967 5y6p:T2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    968 5y6p:T2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    969 5y6p:T3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    970 5y6p:T3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    971 5y6p:T3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    972 5y6p:T4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    973 5y6p:T4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    974 5y6p:T5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    975 5y6p:T5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    976 5y6p:T5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    977 5y6p:T6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    978 5y6p:T6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    979 5y6p:T6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    980 5y6p:T7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    981 5y6p:T7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    982 5y6p:T8 (3.5) BS01 PEB N/A N/A N/A 29045394
    983 5y6p:T8 (3.5) BS02 PEB N/A N/A N/A 29045394
    984 5y6p:T8 (3.5) BS03 PEB N/A N/A N/A 29045394
    985 5y6p:T8 (3.5) BS04 PEB N/A N/A N/A 29045394
    986 5y6p:T8 (3.5) BS05 PEB N/A N/A N/A 29045394
    987 5y6p:T9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    988 5y6p:T9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    989 5y6p:T9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    990 5y6p:U2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    991 5y6p:U2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    992 5y6p:U3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    993 5y6p:U3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    994 5y6p:U3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    995 5y6p:U3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    996 5y6p:U4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    997 5y6p:U4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    998 5y6p:U4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    999 5y6p:U5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    1000 5y6p:U5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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