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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9401 7y4l:w8 (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    9402 7y4l:w8 (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    9403 7y4l:w8 (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    9404 7y4l:w8 (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    9405 7y4l:w8 (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    9406 7y4l:w8 (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    9407 7y4l:w8 (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    9408 7y4l:w8 (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    9409 7y4l:wF (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    9410 7y4l:wF (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    9411 7y4l:wF (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    9412 7y4l:wF (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    9413 7y4l:wF (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    9414 7y4l:wF (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    9415 7y4l:wF (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    9416 7y4l:wF (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    9417 7y4l:wF (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    9418 7y4l:x8 (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    9419 7y4l:x8 (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    9420 7y4l:x8 (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    9421 7y4l:x8 (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    9422 7y4l:x8 (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    9423 7y4l:x8 (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    9424 7y4l:x8 (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    9425 7y4l:x8 (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    9426 7y4l:xF (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    9427 7y4l:xF (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    9428 7y4l:xF (3.3) BS03 PEB ? N/A A0A5J4YZM7 36922595
    9429 7y4l:xF (3.3) BS04 PEB ? N/A A0A5J4YZM7 36922595
    9430 7y4l:xF (3.3) BS05 PEB ? N/A A0A5J4YZM7 36922595
    9431 7y4l:xF (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    9432 7y4l:xF (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    9433 7y4l:xF (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    9434 7y4l:y8 (3.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    9435 7y4l:y8 (3.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    9436 7y4l:y8 (3.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    9437 7y4l:y8 (3.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    9438 7y4l:y8 (3.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    9439 7y4l:y8 (3.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    9440 7y4l:y8 (3.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    9441 7y4l:yF (3.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    9442 7y4l:yF (3.3) BS02 PEB ? N/A A0A5J4YZH3 36922595
    9443 7y4l:yF (3.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    9444 7y4l:yF (3.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    9445 7y4l:yF (3.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    9446 7y4l:yF (3.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    9447 7y4l:yF (3.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    9448 7y4l:z8 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9449 7y4l:z8 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9450 7y4l:z8 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9451 7y4l:z8 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9452 7y4l:z8 (3.3) BS05 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9453 7y4l:zF (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9454 7y4l:zF (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9455 7y4l:zF (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9456 7y4l:zF (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YI31 36922595
    9457 7y5e:18 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9458 7y5e:18 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9459 7y5e:18 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9460 7y5e:18 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9461 7y5e:1C (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9462 7y5e:1C (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9463 7y5e:1C (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9464 7y5e:1C (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9465 7y5e:23 (3.3) BS01 PEB ? N/A A0A5J4YTV6 36922595
    9466 7y5e:33 (3.3) BS01 PEB ? N/A A0A5J4Z2M2 36922595
    9467 7y5e:43 (3.3) BS01 PEB ? GO:0005615 ... A0A5J4ZA95 36922595
    9468 7y5e:A1 (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9469 7y5e:A1 (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    9470 7y5e:A1 (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    9471 7y5e:A1 (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9472 7y5e:A1 (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9473 7y5e:A1 (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9474 7y5e:A1 (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9475 7y5e:A1 (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9476 7y5e:A1 (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9477 7y5e:A1 (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    9478 7y5e:A4 (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9479 7y5e:A4 (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    9480 7y5e:A4 (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    9481 7y5e:A4 (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9482 7y5e:A4 (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9483 7y5e:A4 (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9484 7y5e:A4 (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9485 7y5e:A4 (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9486 7y5e:A4 (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9487 7y5e:A4 (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    9488 7y5e:A5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9489 7y5e:A5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9490 7y5e:A5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9491 7y5e:A7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9492 7y5e:A7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9493 7y5e:A8 (3.3) BS01 PEB N/A N/A N/A 36922595
    9494 7y5e:A8 (3.3) BS02 PEB N/A N/A N/A 36922595
    9495 7y5e:A9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9496 7y5e:A9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9497 7y5e:AA (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9498 7y5e:AA (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9499 7y5e:AB (3.3) BS01 PEB ? N/A A0A5J4YXP2 36922595
    9500 7y5e:AB (3.3) BS02 PEB ? N/A A0A5J4YXP2 36922595
    9501 7y5e:AC (3.3) BS01 PEB N/A N/A N/A 36922595
    9502 7y5e:AD (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9503 7y5e:AD (3.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    9504 7y5e:AD (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    9505 7y5e:AD (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9506 7y5e:AD (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9507 7y5e:AD (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9508 7y5e:AD (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9509 7y5e:AD (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9510 7y5e:AD (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9511 7y5e:AE (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9512 7y5e:AE (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    9513 7y5e:AE (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    9514 7y5e:AE (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9515 7y5e:AE (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9516 7y5e:AE (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9517 7y5e:AE (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9518 7y5e:AE (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9519 7y5e:AE (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9520 7y5e:AE (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    9521 7y5e:AE (3.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    9522 7y5e:AF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9523 7y5e:AF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9524 7y5e:AG (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9525 7y5e:AG (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    9526 7y5e:AG (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    9527 7y5e:AG (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9528 7y5e:AG (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9529 7y5e:AG (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9530 7y5e:AG (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9531 7y5e:AG (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9532 7y5e:AG (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9533 7y5e:AG (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    9534 7y5e:AG (3.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    9535 7y5e:AH (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9536 7y5e:AH (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    9537 7y5e:AH (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    9538 7y5e:AH (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9539 7y5e:AH (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9540 7y5e:AH (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9541 7y5e:AH (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9542 7y5e:AH (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9543 7y5e:AH (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9544 7y5e:AH (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    9545 7y5e:AI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9546 7y5e:AI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9547 7y5e:AI (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9548 7y5e:AJ (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    9549 7y5e:AJ (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    9550 7y5e:AJ (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    9551 7y5e:AJ (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    9552 7y5e:AJ (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    9553 7y5e:AJ (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    9554 7y5e:AJ (3.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    9555 7y5e:AJ (3.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    9556 7y5e:AJ (3.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    9557 7y5e:AK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9558 7y5e:AK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9559 7y5e:AM (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    9560 7y5e:AM (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    9561 7y5e:AM (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    9562 7y5e:AM (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    9563 7y5e:AM (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    9564 7y5e:AM (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    9565 7y5e:AM (3.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    9566 7y5e:AM (3.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    9567 7y5e:AM (3.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    9568 7y5e:AO (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9569 7y5e:AO (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    9570 7y5e:AO (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    9571 7y5e:AO (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9572 7y5e:AO (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9573 7y5e:AO (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9574 7y5e:AO (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9575 7y5e:AO (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9576 7y5e:AO (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9577 7y5e:AO (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    9578 7y5e:AP (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9579 7y5e:AP (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9580 7y5e:AP (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9581 7y5e:AQ (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    9582 7y5e:AQ (3.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    9583 7y5e:AQ (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    9584 7y5e:AQ (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    9585 7y5e:AQ (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    9586 7y5e:AQ (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    9587 7y5e:AQ (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    9588 7y5e:AQ (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    9589 7y5e:AQ (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    9590 7y5e:B5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9591 7y5e:B5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9592 7y5e:B5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9593 7y5e:B5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9594 7y5e:B7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9595 7y5e:B7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9596 7y5e:B7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9597 7y5e:B7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9598 7y5e:B9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9599 7y5e:B9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9600 7y5e:B9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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