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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9001 7y4l:e1 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9002 7y4l:e1 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9003 7y4l:e2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9004 7y4l:e2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9005 7y4l:e2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9006 7y4l:e2 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9007 7y4l:e4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9008 7y4l:e4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9009 7y4l:e4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9010 7y4l:e4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9011 7y4l:e6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9012 7y4l:e6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9013 7y4l:e6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9014 7y4l:e6 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9015 7y4l:e8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9016 7y4l:e8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9017 7y4l:e8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9018 7y4l:eA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9019 7y4l:eA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9020 7y4l:eA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9021 7y4l:eA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9022 7y4l:eB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9023 7y4l:eB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9024 7y4l:eB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9025 7y4l:eB (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9026 7y4l:eC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9027 7y4l:eC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9028 7y4l:eC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9029 7y4l:eC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9030 7y4l:eD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9031 7y4l:eD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9032 7y4l:eD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9033 7y4l:eD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9034 7y4l:eE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9035 7y4l:eE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9036 7y4l:eE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9037 7y4l:eE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9038 7y4l:eF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9039 7y4l:eF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9040 7y4l:eF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9041 7y4l:eH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9042 7y4l:eH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9043 7y4l:eH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9044 7y4l:eH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9045 7y4l:eK (3.3) BS01 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9046 7y4l:eK (3.3) BS02 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9047 7y4l:eK (3.3) BS03 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9048 7y4l:eK (3.3) BS04 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9049 7y4l:eK (3.3) BS05 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9050 7y4l:f2 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9051 7y4l:f2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9052 7y4l:f2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9053 7y4l:f4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9054 7y4l:f4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9055 7y4l:f4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9056 7y4l:f4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    9057 7y4l:f6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9058 7y4l:f6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9059 7y4l:f6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9060 7y4l:f8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9061 7y4l:f8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9062 7y4l:f8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9063 7y4l:fA (3.3) BS01 PEB ? N/A A0A5J4Z027 36922595
    9064 7y4l:fA (3.3) BS02 PEB ? N/A A0A5J4Z027 36922595
    9065 7y4l:fB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9066 7y4l:fB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9067 7y4l:fB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9068 7y4l:fC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9069 7y4l:fC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9070 7y4l:fC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9071 7y4l:fD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9072 7y4l:fD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9073 7y4l:fD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9074 7y4l:fE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9075 7y4l:fE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9076 7y4l:fE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9077 7y4l:fF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9078 7y4l:fF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9079 7y4l:fF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9080 7y4l:fH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9081 7y4l:fH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9082 7y4l:fH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    9083 7y4l:fH (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    9084 7y4l:g2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9085 7y4l:g2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9086 7y4l:g2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9087 7y4l:g2 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9088 7y4l:g4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9089 7y4l:g4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9090 7y4l:g4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9091 7y4l:g4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9092 7y4l:g6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9093 7y4l:g6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9094 7y4l:g6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9095 7y4l:g6 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9096 7y4l:g8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9097 7y4l:g8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9098 7y4l:gA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9099 7y4l:gA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9100 7y4l:gA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9101 7y4l:gA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9102 7y4l:gB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9103 7y4l:gB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9104 7y4l:gB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9105 7y4l:gB (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9106 7y4l:gC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9107 7y4l:gC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9108 7y4l:gC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9109 7y4l:gC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9110 7y4l:gD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9111 7y4l:gD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9112 7y4l:gD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9113 7y4l:gE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9114 7y4l:gE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9115 7y4l:gE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9116 7y4l:gF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9117 7y4l:gF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9118 7y4l:gH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9119 7y4l:gH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9120 7y4l:gH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9121 7y4l:gH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9122 7y4l:h2 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9123 7y4l:h2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9124 7y4l:h2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9125 7y4l:h4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9126 7y4l:h4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9127 7y4l:h4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9128 7y4l:h4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    9129 7y4l:h6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9130 7y4l:h6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9131 7y4l:h6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9132 7y4l:h8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9133 7y4l:h8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9134 7y4l:h8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9135 7y4l:h8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9136 7y4l:hA (3.3) BS01 PEB ? N/A A0A5J4Z027 36922595
    9137 7y4l:hA (3.3) BS02 PEB ? N/A A0A5J4Z027 36922595
    9138 7y4l:hA (3.3) BS03 PEB ? N/A A0A5J4Z027 36922595
    9139 7y4l:hB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9140 7y4l:hB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9141 7y4l:hB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9142 7y4l:hC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9143 7y4l:hC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9144 7y4l:hC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9145 7y4l:hD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9146 7y4l:hD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9147 7y4l:hE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9148 7y4l:hE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9149 7y4l:hF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9150 7y4l:hF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9151 7y4l:hF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9152 7y4l:hF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9153 7y4l:hH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9154 7y4l:hH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9155 7y4l:hH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9156 7y4l:hH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    9157 7y4l:i2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9158 7y4l:i2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9159 7y4l:i2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9160 7y4l:i2 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9161 7y4l:i4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9162 7y4l:i4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9163 7y4l:i4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9164 7y4l:i4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9165 7y4l:i6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9166 7y4l:i6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9167 7y4l:i6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9168 7y4l:i8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9169 7y4l:i8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9170 7y4l:i8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9171 7y4l:iB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9172 7y4l:iB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9173 7y4l:iB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9174 7y4l:iC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9175 7y4l:iC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9176 7y4l:iC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9177 7y4l:iC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9178 7y4l:iD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9179 7y4l:iD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9180 7y4l:iD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9181 7y4l:iD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9182 7y4l:iE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9183 7y4l:iE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9184 7y4l:iE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9185 7y4l:iE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9186 7y4l:iF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9187 7y4l:iF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9188 7y4l:iF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9189 7y4l:iH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    9190 7y4l:iH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    9191 7y4l:iH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    9192 7y4l:iH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    9193 7y4l:j2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9194 7y4l:j2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9195 7y4l:j2 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    9196 7y4l:j4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9197 7y4l:j4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    9198 7y4l:j4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    9199 7y4l:j6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    9200 7y4l:j6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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