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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8801 7y4l:ZG (3.3) BS04 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    8802 7y4l:ZG (3.3) BS05 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    8803 7y4l:ZH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8804 7y4l:ZH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8805 7y4l:ZH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8806 7y4l:ZH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8807 7y4l:ZI (3.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    8808 7y4l:ZI (3.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    8809 7y4l:ZI (3.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    8810 7y4l:ZI (3.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    8811 7y4l:ZI (3.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    8812 7y4l:ZI (3.3) BS07 PEB ? N/A A0A5J4YNU6 36922595
    8813 7y4l:ZI (3.3) BS08 PEB ? N/A A0A5J4YNU6 36922595
    8814 7y4l:ZI (3.3) BS10 PEB ? N/A A0A5J4YNU6 36922595
    8815 7y4l:ZI (3.3) BS11 PEB ? N/A A0A5J4YNU6 36922595
    8816 7y4l:a2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8817 7y4l:a2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8818 7y4l:a2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8819 7y4l:a2 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8820 7y4l:a3 (3.3) BS01 PEB ? N/A A0A5J4Z2M2 36922595
    8821 7y4l:a4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8822 7y4l:a4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8823 7y4l:a4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8824 7y4l:a4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8825 7y4l:a6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8826 7y4l:a6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8827 7y4l:a6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8828 7y4l:a6 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8829 7y4l:a8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8830 7y4l:a8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8831 7y4l:a8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8832 7y4l:a8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8833 7y4l:aA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8834 7y4l:aA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8835 7y4l:aA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8836 7y4l:aA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8837 7y4l:aB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8838 7y4l:aB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8839 7y4l:aB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8840 7y4l:aB (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8841 7y4l:aC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8842 7y4l:aC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8843 7y4l:aC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8844 7y4l:aC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8845 7y4l:aD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8846 7y4l:aD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8847 7y4l:aD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8848 7y4l:aD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8849 7y4l:aE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8850 7y4l:aE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8851 7y4l:aE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8852 7y4l:aE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8853 7y4l:aF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8854 7y4l:aF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8855 7y4l:aF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8856 7y4l:aF (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8857 7y4l:aH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8858 7y4l:aH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8859 7y4l:aH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8860 7y4l:b2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8861 7y4l:b2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8862 7y4l:b2 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8863 7y4l:b3 (3.3) BS01 PEB ? GO:0005615 ... A0A5J4ZA95 36922595
    8864 7y4l:b4 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8865 7y4l:b4 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8866 7y4l:b4 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8867 7y4l:b4 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8868 7y4l:b6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8869 7y4l:b6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8870 7y4l:b6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8871 7y4l:b7 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8872 7y4l:b7 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8873 7y4l:b7 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8874 7y4l:b7 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8875 7y4l:b7 (3.3) BS05 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8876 7y4l:b7 (3.3) BS06 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8877 7y4l:b7 (3.3) BS07 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8878 7y4l:b7 (3.3) BS08 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8879 7y4l:b7 (3.3) BS09 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8880 7y4l:b8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8881 7y4l:b8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8882 7y4l:b8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8883 7y4l:b8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8884 7y4l:bA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8885 7y4l:bA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8886 7y4l:bA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8887 7y4l:bB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8888 7y4l:bB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8889 7y4l:bB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8890 7y4l:bC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8891 7y4l:bC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8892 7y4l:bC (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8893 7y4l:bD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8894 7y4l:bD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8895 7y4l:bD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8896 7y4l:bE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8897 7y4l:bE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8898 7y4l:bE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8899 7y4l:bF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8900 7y4l:bF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8901 7y4l:bF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8902 7y4l:bF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8903 7y4l:bH (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8904 7y4l:bH (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8905 7y4l:bH (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8906 7y4l:bH (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YX63 36922595
    8907 7y4l:c2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8908 7y4l:c2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8909 7y4l:c2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8910 7y4l:c2 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8911 7y4l:c4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8912 7y4l:c4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8913 7y4l:c4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8914 7y4l:c4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8915 7y4l:c6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8916 7y4l:c6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8917 7y4l:c6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8918 7y4l:c6 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8919 7y4l:c8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8920 7y4l:c8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8921 7y4l:c8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8922 7y4l:cA (3.3) BS01 PEB ? N/A A0A5J4YX67 36922595
    8923 7y4l:cA (3.3) BS02 PEB ? N/A A0A5J4YX67 36922595
    8924 7y4l:cB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8925 7y4l:cB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8926 7y4l:cB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8927 7y4l:cB (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8928 7y4l:cC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8929 7y4l:cC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8930 7y4l:cC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8931 7y4l:cC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8932 7y4l:cD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8933 7y4l:cD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8934 7y4l:cD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8935 7y4l:cD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8936 7y4l:cE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8937 7y4l:cE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8938 7y4l:cE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8939 7y4l:cE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8940 7y4l:cF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8941 7y4l:cF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8942 7y4l:cF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8943 7y4l:cH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8944 7y4l:cH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8945 7y4l:cH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8946 7y4l:cH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8947 7y4l:d2 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8948 7y4l:d2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8949 7y4l:d2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8950 7y4l:d4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8951 7y4l:d4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8952 7y4l:d4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8953 7y4l:d4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8954 7y4l:d5 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8955 7y4l:d5 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8956 7y4l:d5 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8957 7y4l:d5 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8958 7y4l:d5 (3.3) BS05 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8959 7y4l:d5 (3.3) BS06 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8960 7y4l:d6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8961 7y4l:d6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8962 7y4l:d6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8963 7y4l:d6 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8964 7y4l:d8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8965 7y4l:d8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8966 7y4l:d8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8967 7y4l:d8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8968 7y4l:dA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8969 7y4l:dA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8970 7y4l:dA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8971 7y4l:dA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8972 7y4l:dB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8973 7y4l:dB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8974 7y4l:dB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8975 7y4l:dB (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8976 7y4l:dC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8977 7y4l:dC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8978 7y4l:dC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8979 7y4l:dD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8980 7y4l:dD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8981 7y4l:dD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8982 7y4l:dE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8983 7y4l:dE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8984 7y4l:dE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8985 7y4l:dF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8986 7y4l:dF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8987 7y4l:dF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8988 7y4l:dF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8989 7y4l:dH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8990 7y4l:dH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8991 7y4l:dH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8992 7y4l:dH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8993 7y4l:dJ (3.3) BS01 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8994 7y4l:dJ (3.3) BS02 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8995 7y4l:dJ (3.3) BS03 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8996 7y4l:dJ (3.3) BS04 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8997 7y4l:dJ (3.3) BS05 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8998 7y4l:dJ (3.3) BS06 PEB ? GO:0009507 ... A0A5J4Z162 36922595
    8999 7y4l:e1 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    9000 7y4l:e1 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4Z7F4 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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