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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 7y4l:X2 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8602 7y4l:X2 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8603 7y4l:X2 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8604 7y4l:X4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8605 7y4l:X4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8606 7y4l:X4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8607 7y4l:X4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8608 7y4l:X5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8609 7y4l:X5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8610 7y4l:X5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8611 7y4l:X6 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8612 7y4l:X6 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8613 7y4l:X6 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8614 7y4l:X6 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8615 7y4l:X7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8616 7y4l:X7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8617 7y4l:X7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8618 7y4l:X8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8619 7y4l:X8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8620 7y4l:X8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8621 7y4l:X8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8622 7y4l:X9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8623 7y4l:X9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8624 7y4l:X9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8625 7y4l:XA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8626 7y4l:XA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8627 7y4l:XA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8628 7y4l:XA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8629 7y4l:XB (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8630 7y4l:XB (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8631 7y4l:XB (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8632 7y4l:XB (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8633 7y4l:XC (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8634 7y4l:XC (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8635 7y4l:XC (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8636 7y4l:XC (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8637 7y4l:XD (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8638 7y4l:XD (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8639 7y4l:XD (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8640 7y4l:XD (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8641 7y4l:XE (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8642 7y4l:XE (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8643 7y4l:XE (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8644 7y4l:XE (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    8645 7y4l:XF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8646 7y4l:XF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8647 7y4l:XF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8648 7y4l:XF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8649 7y4l:XG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8650 7y4l:XG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8651 7y4l:XG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8652 7y4l:XH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8653 7y4l:XH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8654 7y4l:XH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8655 7y4l:XI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8656 7y4l:XI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8657 7y4l:XJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8658 7y4l:XJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8659 7y4l:XJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8660 7y4l:XK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8661 7y4l:XK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8662 7y4l:XK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8663 7y4l:Y1 (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    8664 7y4l:Y1 (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    8665 7y4l:Y1 (3.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    8666 7y4l:Y1 (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    8667 7y4l:Y1 (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    8668 7y4l:Y1 (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    8669 7y4l:Y1 (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    8670 7y4l:Y1 (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    8671 7y4l:Y1 (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    8672 7y4l:Y2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8673 7y4l:Y2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8674 7y4l:Y2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8675 7y4l:Y2 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8676 7y4l:Y4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8677 7y4l:Y4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8678 7y4l:Y4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8679 7y4l:Y4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8680 7y4l:Y5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8681 7y4l:Y5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8682 7y4l:Y5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8683 7y4l:Y5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8684 7y4l:Y6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8685 7y4l:Y6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8686 7y4l:Y6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8687 7y4l:Y7 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8688 7y4l:Y7 (3.3) BS02 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8689 7y4l:Y7 (3.3) BS03 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8690 7y4l:Y7 (3.3) BS04 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8691 7y4l:Y7 (3.3) BS05 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8692 7y4l:Y7 (3.3) BS06 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8693 7y4l:Y7 (3.3) BS07 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8694 7y4l:Y7 (3.3) BS08 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8695 7y4l:Y7 (3.3) BS09 PEB ? GO:0009507 ... A0A5J4YMI8 36922595
    8696 7y4l:Y8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8697 7y4l:Y8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8698 7y4l:Y8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8699 7y4l:Y8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8700 7y4l:Y9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8701 7y4l:Y9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8702 7y4l:Y9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8703 7y4l:Y9 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8704 7y4l:YA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8705 7y4l:YA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8706 7y4l:YA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8707 7y4l:YA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8708 7y4l:YB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8709 7y4l:YB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8710 7y4l:YB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8711 7y4l:YC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8712 7y4l:YC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8713 7y4l:YC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8714 7y4l:YC (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8715 7y4l:YD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8716 7y4l:YD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8717 7y4l:YD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8718 7y4l:YD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8719 7y4l:YE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8720 7y4l:YE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8721 7y4l:YE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8722 7y4l:YE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8723 7y4l:YF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8724 7y4l:YF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8725 7y4l:YF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8726 7y4l:YF (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8727 7y4l:YG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8728 7y4l:YG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8729 7y4l:YG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8730 7y4l:YG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8731 7y4l:YH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8732 7y4l:YH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8733 7y4l:YH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8734 7y4l:YH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8735 7y4l:YI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8736 7y4l:YI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8737 7y4l:YI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8738 7y4l:YI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8739 7y4l:YJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8740 7y4l:YJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8741 7y4l:YJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8742 7y4l:YJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8743 7y4l:YK (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    8744 7y4l:YK (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    8745 7y4l:YK (3.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    8746 7y4l:YK (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    8747 7y4l:YK (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    8748 7y4l:YK (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    8749 7y4l:YK (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    8750 7y4l:YK (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    8751 7y4l:YK (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    8752 7y4l:Z2 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8753 7y4l:Z2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8754 7y4l:Z2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8755 7y4l:Z2 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8756 7y4l:Z3 (3.3) BS01 PEB ? N/A A0A5J4YTV6 36922595
    8757 7y4l:Z4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8758 7y4l:Z4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8759 7y4l:Z4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8760 7y4l:Z4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8761 7y4l:Z6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8762 7y4l:Z6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8763 7y4l:Z6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8764 7y4l:Z6 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8765 7y4l:Z8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8766 7y4l:Z8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8767 7y4l:Z8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8768 7y4l:Z8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8769 7y4l:Z9 (3.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    8770 7y4l:Z9 (3.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    8771 7y4l:Z9 (3.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    8772 7y4l:Z9 (3.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    8773 7y4l:Z9 (3.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    8774 7y4l:Z9 (3.3) BS06 PEB ? N/A A0A5J4YNU6 36922595
    8775 7y4l:Z9 (3.3) BS07 PEB ? N/A A0A5J4YNU6 36922595
    8776 7y4l:Z9 (3.3) BS08 PEB ? N/A A0A5J4YNU6 36922595
    8777 7y4l:ZA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8778 7y4l:ZA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8779 7y4l:ZA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8780 7y4l:ZB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8781 7y4l:ZB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8782 7y4l:ZB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8783 7y4l:ZB (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8784 7y4l:ZC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8785 7y4l:ZC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8786 7y4l:ZC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8787 7y4l:ZC (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8788 7y4l:ZD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8789 7y4l:ZD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8790 7y4l:ZD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8791 7y4l:ZE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8792 7y4l:ZE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8793 7y4l:ZE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8794 7y4l:ZF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8795 7y4l:ZF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8796 7y4l:ZF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8797 7y4l:ZF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8798 7y4l:ZG (3.3) BS01 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    8799 7y4l:ZG (3.3) BS02 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    8800 7y4l:ZG (3.3) BS03 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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