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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8401 7y4l:U2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8402 7y4l:U2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8403 7y4l:U4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8404 7y4l:U4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8405 7y4l:U4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8406 7y4l:U4 (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    8407 7y4l:U5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8408 7y4l:U5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8409 7y4l:U5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8410 7y4l:U5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8411 7y4l:U6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8412 7y4l:U6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8413 7y4l:U6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8414 7y4l:U7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8415 7y4l:U7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8416 7y4l:U7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8417 7y4l:U8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8418 7y4l:U8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8419 7y4l:U8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8420 7y4l:U9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8421 7y4l:U9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8422 7y4l:U9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8423 7y4l:UA (3.3) BS01 PEB ? N/A A0A5J4YJY8 36922595
    8424 7y4l:UA (3.3) BS02 PEB ? N/A A0A5J4YJY8 36922595
    8425 7y4l:UA (3.3) BS03 PEB ? N/A A0A5J4YJY8 36922595
    8426 7y4l:UA (3.3) BS04 PEB ? N/A A0A5J4YJY8 36922595
    8427 7y4l:UA (3.3) BS05 PEB ? N/A A0A5J4YJY8 36922595
    8428 7y4l:UA (3.3) BS06 PEB ? N/A A0A5J4YJY8 36922595
    8429 7y4l:UA (3.3) BS07 PEB ? N/A A0A5J4YJY8 36922595
    8430 7y4l:UB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8431 7y4l:UB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8432 7y4l:UB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8433 7y4l:UC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8434 7y4l:UC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8435 7y4l:UC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8436 7y4l:UD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8437 7y4l:UD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8438 7y4l:UD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8439 7y4l:UD (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8440 7y4l:UE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8441 7y4l:UE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8442 7y4l:UE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8443 7y4l:UE (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8444 7y4l:UF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8445 7y4l:UF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8446 7y4l:UF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8447 7y4l:UG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8448 7y4l:UG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8449 7y4l:UG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8450 7y4l:UG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8451 7y4l:UH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8452 7y4l:UH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8453 7y4l:UH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8454 7y4l:UI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8455 7y4l:UI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8456 7y4l:UI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8457 7y4l:UI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8458 7y4l:UI (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    8459 7y4l:UJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8460 7y4l:UJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8461 7y4l:UJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8462 7y4l:UJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8463 7y4l:UK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8464 7y4l:UK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8465 7y4l:UK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8466 7y4l:V1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8467 7y4l:V1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8468 7y4l:V1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8469 7y4l:V1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8470 7y4l:V2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8471 7y4l:V2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8472 7y4l:V2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8473 7y4l:V4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8474 7y4l:V4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8475 7y4l:V4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8476 7y4l:V4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8477 7y4l:V5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8478 7y4l:V5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8479 7y4l:V5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8480 7y4l:V6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8481 7y4l:V6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8482 7y4l:V6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8483 7y4l:V6 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8484 7y4l:V7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8485 7y4l:V7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8486 7y4l:V7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8487 7y4l:V7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8488 7y4l:V8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8489 7y4l:V8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8490 7y4l:V8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8491 7y4l:V8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8492 7y4l:V9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8493 7y4l:V9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8494 7y4l:V9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8495 7y4l:VA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8496 7y4l:VA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8497 7y4l:VA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8498 7y4l:VA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8499 7y4l:VB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8500 7y4l:VB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8501 7y4l:VB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8502 7y4l:VC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8503 7y4l:VC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8504 7y4l:VC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8505 7y4l:VD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8506 7y4l:VD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8507 7y4l:VD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8508 7y4l:VD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8509 7y4l:VE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8510 7y4l:VE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8511 7y4l:VE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8512 7y4l:VE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8513 7y4l:VF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8514 7y4l:VF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8515 7y4l:VF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8516 7y4l:VF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8517 7y4l:VG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8518 7y4l:VG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8519 7y4l:VG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8520 7y4l:VH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8521 7y4l:VH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8522 7y4l:VH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8523 7y4l:VH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8524 7y4l:VI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8525 7y4l:VI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8526 7y4l:VJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8527 7y4l:VJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8528 7y4l:VJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8529 7y4l:VK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8530 7y4l:VK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8531 7y4l:VK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8532 7y4l:VK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8533 7y4l:W1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8534 7y4l:W1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8535 7y4l:W1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8536 7y4l:W2 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8537 7y4l:W2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8538 7y4l:W2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8539 7y4l:W4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8540 7y4l:W4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8541 7y4l:W4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8542 7y4l:W4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8543 7y4l:W5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8544 7y4l:W5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8545 7y4l:W5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8546 7y4l:W5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8547 7y4l:W6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8548 7y4l:W6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8549 7y4l:W6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8550 7y4l:W7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8551 7y4l:W7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8552 7y4l:W8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8553 7y4l:W8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8554 7y4l:W8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8555 7y4l:W9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8556 7y4l:W9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8557 7y4l:W9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8558 7y4l:W9 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8559 7y4l:WA (3.3) BS01 PEB ? N/A A0A5J4YX67 36922595
    8560 7y4l:WA (3.3) BS02 PEB ? N/A A0A5J4YX67 36922595
    8561 7y4l:WB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8562 7y4l:WB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8563 7y4l:WB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8564 7y4l:WC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8565 7y4l:WC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8566 7y4l:WC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8567 7y4l:WD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8568 7y4l:WD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8569 7y4l:WD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8570 7y4l:WD (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8571 7y4l:WE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8572 7y4l:WE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8573 7y4l:WE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8574 7y4l:WE (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8575 7y4l:WF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8576 7y4l:WF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8577 7y4l:WF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8578 7y4l:WG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8579 7y4l:WG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8580 7y4l:WG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8581 7y4l:WG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8582 7y4l:WH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8583 7y4l:WH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8584 7y4l:WH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8585 7y4l:WH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8586 7y4l:WI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8587 7y4l:WI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8588 7y4l:WI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8589 7y4l:WI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8590 7y4l:WJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8591 7y4l:WJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8592 7y4l:WJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8593 7y4l:WJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8594 7y4l:WK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8595 7y4l:WK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8596 7y4l:WK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8597 7y4l:X1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8598 7y4l:X1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8599 7y4l:X1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8600 7y4l:X2 (3.3) BS01 PEB ? GO:0009507 ... A0A5J4YM59 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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