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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8001 7y4l:O1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8002 7y4l:O1 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8003 7y4l:O2 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8004 7y4l:O2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8005 7y4l:O2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8006 7y4l:O2 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8007 7y4l:O4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8008 7y4l:O4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8009 7y4l:O4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8010 7y4l:O4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8011 7y4l:O5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8012 7y4l:O5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8013 7y4l:O5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8014 7y4l:O6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8015 7y4l:O6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8016 7y4l:O6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8017 7y4l:O7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8018 7y4l:O7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8019 7y4l:O7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8020 7y4l:O8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8021 7y4l:O8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8022 7y4l:O8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8023 7y4l:O8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8024 7y4l:O9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8025 7y4l:O9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8026 7y4l:O9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8027 7y4l:OA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8028 7y4l:OA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8029 7y4l:OA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8030 7y4l:OB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8031 7y4l:OB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8032 7y4l:OB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8033 7y4l:OC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8034 7y4l:OC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8035 7y4l:OC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8036 7y4l:OC (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8037 7y4l:OD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8038 7y4l:OD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8039 7y4l:OD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8040 7y4l:OE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8041 7y4l:OE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8042 7y4l:OE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8043 7y4l:OF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8044 7y4l:OF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8045 7y4l:OF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8046 7y4l:OF (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8047 7y4l:OG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8048 7y4l:OG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8049 7y4l:OG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8050 7y4l:OG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8051 7y4l:OH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8052 7y4l:OH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8053 7y4l:OH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8054 7y4l:OH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8055 7y4l:OI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8056 7y4l:OI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8057 7y4l:OI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8058 7y4l:OI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8059 7y4l:OJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8060 7y4l:OJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8061 7y4l:OJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8062 7y4l:OK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8063 7y4l:OK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8064 7y4l:OK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8065 7y4l:OK (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8066 7y4l:P1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8067 7y4l:P1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8068 7y4l:P1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8069 7y4l:P2 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8070 7y4l:P2 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8071 7y4l:P2 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8072 7y4l:P4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8073 7y4l:P4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8074 7y4l:P4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8075 7y4l:P4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8076 7y4l:P5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8077 7y4l:P5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8078 7y4l:P5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8079 7y4l:P6 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8080 7y4l:P6 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8081 7y4l:P6 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8082 7y4l:P7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8083 7y4l:P7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8084 7y4l:P7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8085 7y4l:P7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8086 7y4l:P8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8087 7y4l:P8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8088 7y4l:P8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8089 7y4l:P8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8090 7y4l:P9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8091 7y4l:P9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8092 7y4l:P9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8093 7y4l:PA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8094 7y4l:PA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8095 7y4l:PA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8096 7y4l:PA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8097 7y4l:PB (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8098 7y4l:PB (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8099 7y4l:PB (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8100 7y4l:PC (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8101 7y4l:PC (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8102 7y4l:PC (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8103 7y4l:PD (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8104 7y4l:PD (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8105 7y4l:PD (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8106 7y4l:PD (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8107 7y4l:PE (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8108 7y4l:PE (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8109 7y4l:PE (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8110 7y4l:PE (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8111 7y4l:PF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8112 7y4l:PF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8113 7y4l:PF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8114 7y4l:PF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8115 7y4l:PG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8116 7y4l:PG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8117 7y4l:PG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8118 7y4l:PH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8119 7y4l:PH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8120 7y4l:PH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8121 7y4l:PH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8122 7y4l:PI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8123 7y4l:PI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8124 7y4l:PJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8125 7y4l:PJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8126 7y4l:PJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8127 7y4l:PK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8128 7y4l:PK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8129 7y4l:PK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8130 7y4l:Q1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8131 7y4l:Q1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8132 7y4l:Q1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8133 7y4l:Q1 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8134 7y4l:Q2 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8135 7y4l:Q2 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8136 7y4l:Q2 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8137 7y4l:Q4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8138 7y4l:Q4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8139 7y4l:Q4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8140 7y4l:Q4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8141 7y4l:Q5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8142 7y4l:Q5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8143 7y4l:Q5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8144 7y4l:Q5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8145 7y4l:Q6 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8146 7y4l:Q6 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8147 7y4l:Q6 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8148 7y4l:Q6 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8149 7y4l:Q7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8150 7y4l:Q7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8151 7y4l:Q7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8152 7y4l:Q8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8153 7y4l:Q8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8154 7y4l:Q8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8155 7y4l:Q9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8156 7y4l:Q9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8157 7y4l:Q9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8158 7y4l:QA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8159 7y4l:QA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8160 7y4l:QA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8161 7y4l:QA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8162 7y4l:QA (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    8163 7y4l:QB (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8164 7y4l:QB (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8165 7y4l:QB (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8166 7y4l:QB (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8167 7y4l:QC (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8168 7y4l:QC (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8169 7y4l:QC (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8170 7y4l:QD (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8171 7y4l:QD (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8172 7y4l:QD (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8173 7y4l:QE (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8174 7y4l:QE (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8175 7y4l:QE (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8176 7y4l:QF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8177 7y4l:QF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8178 7y4l:QF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8179 7y4l:QG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8180 7y4l:QG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8181 7y4l:QG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8182 7y4l:QG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8183 7y4l:QH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8184 7y4l:QH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8185 7y4l:QH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8186 7y4l:QH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8187 7y4l:QI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8188 7y4l:QI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8189 7y4l:QI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8190 7y4l:QJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8191 7y4l:QJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8192 7y4l:QJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    8193 7y4l:QJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    8194 7y4l:QK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8195 7y4l:QK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    8196 7y4l:QK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    8197 7y4l:QK (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    8198 7y4l:R1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    8199 7y4l:R1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    8200 7y4l:R1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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