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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7801 7y4l:KA (3.3) BS02 PEB ? N/A A0A5J4YJY8 36922595
    7802 7y4l:KA (3.3) BS03 PEB ? N/A A0A5J4YJY8 36922595
    7803 7y4l:KA (3.3) BS04 PEB ? N/A A0A5J4YJY8 36922595
    7804 7y4l:KA (3.3) BS05 PEB ? N/A A0A5J4YJY8 36922595
    7805 7y4l:KA (3.3) BS06 PEB ? N/A A0A5J4YJY8 36922595
    7806 7y4l:KA (3.3) BS07 PEB ? N/A A0A5J4YJY8 36922595
    7807 7y4l:KC (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7808 7y4l:KD (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7809 7y4l:KE (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7810 7y4l:KF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7811 7y4l:KF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7812 7y4l:KG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7813 7y4l:KG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7814 7y4l:KH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7815 7y4l:KH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7816 7y4l:KH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7817 7y4l:KH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7818 7y4l:KI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7819 7y4l:KI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7820 7y4l:KI (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7821 7y4l:KI (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7822 7y4l:KJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7823 7y4l:KJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7824 7y4l:KJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7825 7y4l:KJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7826 7y4l:KK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7827 7y4l:KK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7828 7y4l:KK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7829 7y4l:KK (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    7830 7y4l:L1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7831 7y4l:L1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7832 7y4l:L1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7833 7y4l:L1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7834 7y4l:L2 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7835 7y4l:L4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7836 7y4l:L4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7837 7y4l:L4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7838 7y4l:L4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7839 7y4l:L5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7840 7y4l:L5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7841 7y4l:L5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7842 7y4l:L5 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7843 7y4l:L6 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7844 7y4l:L7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7845 7y4l:L7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7846 7y4l:L7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7847 7y4l:L8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7848 7y4l:L8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7849 7y4l:L8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7850 7y4l:L8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7851 7y4l:L9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7852 7y4l:L9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7853 7y4l:L9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7854 7y4l:L9 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7855 7y4l:LA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7856 7y4l:LA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7857 7y4l:LA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7858 7y4l:LA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7859 7y4l:LB (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7860 7y4l:LC (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7861 7y4l:LD (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7862 7y4l:LE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7863 7y4l:LF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7864 7y4l:LF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7865 7y4l:LF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7866 7y4l:LF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7867 7y4l:LG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7868 7y4l:LG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7869 7y4l:LG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7870 7y4l:LG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7871 7y4l:LH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7872 7y4l:LH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7873 7y4l:LH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7874 7y4l:LH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7875 7y4l:LI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7876 7y4l:LI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7877 7y4l:LI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7878 7y4l:LJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7879 7y4l:LJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7880 7y4l:LJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7881 7y4l:LJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7882 7y4l:LK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7883 7y4l:LK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7884 7y4l:LK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7885 7y4l:LK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7886 7y4l:M1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7887 7y4l:M1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7888 7y4l:M1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7889 7y4l:M2 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7890 7y4l:M4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7891 7y4l:M4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7892 7y4l:M4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7893 7y4l:M5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7894 7y4l:M5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7895 7y4l:M5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7896 7y4l:M5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7897 7y4l:M6 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7898 7y4l:M7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7899 7y4l:M7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7900 7y4l:M7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7901 7y4l:M8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7902 7y4l:M8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7903 7y4l:M8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7904 7y4l:M8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7905 7y4l:M9 (3.3) BS01 PEB ? N/A A0A5J4YNU6 36922595
    7906 7y4l:M9 (3.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    7907 7y4l:M9 (3.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    7908 7y4l:M9 (3.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    7909 7y4l:M9 (3.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    7910 7y4l:M9 (3.3) BS06 PEB ? N/A A0A5J4YNU6 36922595
    7911 7y4l:M9 (3.3) BS07 PEB ? N/A A0A5J4YNU6 36922595
    7912 7y4l:M9 (3.3) BS08 PEB ? N/A A0A5J4YNU6 36922595
    7913 7y4l:MA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7914 7y4l:MA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7915 7y4l:MA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7916 7y4l:MB (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7917 7y4l:MC (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7918 7y4l:MD (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7919 7y4l:ME (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7920 7y4l:MF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7921 7y4l:MF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7922 7y4l:MF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7923 7y4l:MF (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7924 7y4l:MG (3.3) BS01 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    7925 7y4l:MG (3.3) BS02 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    7926 7y4l:MG (3.3) BS03 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    7927 7y4l:MG (3.3) BS04 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    7928 7y4l:MG (3.3) BS05 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    7929 7y4l:MG (3.3) BS06 PEB ? GO:0009507 ... A0A5J4Z323 36922595
    7930 7y4l:MH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7931 7y4l:MH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7932 7y4l:MH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7933 7y4l:MH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7934 7y4l:MI (3.3) BS02 PEB ? N/A A0A5J4YNU6 36922595
    7935 7y4l:MI (3.3) BS03 PEB ? N/A A0A5J4YNU6 36922595
    7936 7y4l:MI (3.3) BS04 PEB ? N/A A0A5J4YNU6 36922595
    7937 7y4l:MI (3.3) BS05 PEB ? N/A A0A5J4YNU6 36922595
    7938 7y4l:MI (3.3) BS07 PEB ? N/A A0A5J4YNU6 36922595
    7939 7y4l:MI (3.3) BS08 PEB ? N/A A0A5J4YNU6 36922595
    7940 7y4l:MI (3.3) BS09 PEB ? N/A A0A5J4YNU6 36922595
    7941 7y4l:MJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7942 7y4l:MJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7943 7y4l:MJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7944 7y4l:MJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7945 7y4l:MK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7946 7y4l:MK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7947 7y4l:MK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7948 7y4l:N1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7949 7y4l:N1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7950 7y4l:N1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7951 7y4l:N1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7952 7y4l:N2 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7953 7y4l:N4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7954 7y4l:N4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7955 7y4l:N4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7956 7y4l:N5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7957 7y4l:N5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7958 7y4l:N5 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7959 7y4l:N6 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7960 7y4l:N7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7961 7y4l:N7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7962 7y4l:N7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7963 7y4l:N7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7964 7y4l:N8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7965 7y4l:N8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7966 7y4l:N8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7967 7y4l:N8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7968 7y4l:N9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7969 7y4l:N9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7970 7y4l:N9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7971 7y4l:N9 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7972 7y4l:NA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7973 7y4l:NA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7974 7y4l:NA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7975 7y4l:NB (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7976 7y4l:NC (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7977 7y4l:ND (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7978 7y4l:NE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7979 7y4l:NF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7980 7y4l:NF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7981 7y4l:NF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7982 7y4l:NF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7983 7y4l:NG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7984 7y4l:NG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7985 7y4l:NG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7986 7y4l:NH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7987 7y4l:NH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7988 7y4l:NH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7989 7y4l:NH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7990 7y4l:NI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7991 7y4l:NI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7992 7y4l:NJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7993 7y4l:NJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7994 7y4l:NJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7995 7y4l:NK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7996 7y4l:NK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7997 7y4l:NK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7998 7y4l:NK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7999 7y4l:O1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    8000 7y4l:O1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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