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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7601 7y4l:GF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7602 7y4l:GF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7603 7y4l:GF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7604 7y4l:GG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7605 7y4l:GG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7606 7y4l:GG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7607 7y4l:GH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7608 7y4l:GH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7609 7y4l:GH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7610 7y4l:GI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7611 7y4l:GI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7612 7y4l:GI (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7613 7y4l:GJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7614 7y4l:GJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7615 7y4l:GJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7616 7y4l:GJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7617 7y4l:GK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7618 7y4l:GK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7619 7y4l:GK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7620 7y4l:GK (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7621 7y4l:H1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7622 7y4l:H1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7623 7y4l:H1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7624 7y4l:H1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7625 7y4l:H2 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7626 7y4l:H4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7627 7y4l:H4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7628 7y4l:H4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7629 7y4l:H4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7630 7y4l:H5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7631 7y4l:H5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7632 7y4l:H5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7633 7y4l:H6 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7634 7y4l:H7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7635 7y4l:H7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7636 7y4l:H7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7637 7y4l:H8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7638 7y4l:H8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7639 7y4l:H8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7640 7y4l:H8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7641 7y4l:H9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7642 7y4l:H9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7643 7y4l:H9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7644 7y4l:HA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7645 7y4l:HA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7646 7y4l:HA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7647 7y4l:HA (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7648 7y4l:HB (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7649 7y4l:HC (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7650 7y4l:HD (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7651 7y4l:HE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7652 7y4l:HF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7653 7y4l:HF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7654 7y4l:HF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7655 7y4l:HF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7656 7y4l:HG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7657 7y4l:HG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7658 7y4l:HG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7659 7y4l:HG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7660 7y4l:HH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7661 7y4l:HH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7662 7y4l:HH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7663 7y4l:HH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7664 7y4l:HI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7665 7y4l:HI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7666 7y4l:HI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7667 7y4l:HI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7668 7y4l:HI (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    7669 7y4l:HJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7670 7y4l:HJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7671 7y4l:HJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7672 7y4l:HK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7673 7y4l:HK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7674 7y4l:HK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7675 7y4l:HK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7676 7y4l:I1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7677 7y4l:I1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7678 7y4l:I1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7679 7y4l:I2 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7680 7y4l:I4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7681 7y4l:I4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7682 7y4l:I4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7683 7y4l:I4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7684 7y4l:I5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7685 7y4l:I5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7686 7y4l:I5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7687 7y4l:I5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7688 7y4l:I6 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7689 7y4l:I7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7690 7y4l:I7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7691 7y4l:I7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7692 7y4l:I8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7693 7y4l:I8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7694 7y4l:I8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7695 7y4l:I8 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7696 7y4l:I9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7697 7y4l:I9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7698 7y4l:I9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7699 7y4l:I9 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7700 7y4l:IA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7701 7y4l:IA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7702 7y4l:IA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7703 7y4l:IB (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7704 7y4l:IC (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7705 7y4l:ID (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7706 7y4l:IE (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7707 7y4l:IF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7708 7y4l:IF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7709 7y4l:IF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7710 7y4l:IF (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7711 7y4l:IG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7712 7y4l:IG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7713 7y4l:IG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7714 7y4l:IH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7715 7y4l:IH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7716 7y4l:IH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7717 7y4l:IH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7718 7y4l:II (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7719 7y4l:II (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7720 7y4l:IJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7721 7y4l:IJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7722 7y4l:IJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7723 7y4l:IJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7724 7y4l:IK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7725 7y4l:IK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7726 7y4l:IK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7727 7y4l:J1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7728 7y4l:J1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7729 7y4l:J1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7730 7y4l:J1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7731 7y4l:J2 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7732 7y4l:J4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7733 7y4l:J4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7734 7y4l:J4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7735 7y4l:J4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7736 7y4l:J4 (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    7737 7y4l:J5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7738 7y4l:J5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7739 7y4l:J5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7740 7y4l:J6 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7741 7y4l:J7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7742 7y4l:J7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7743 7y4l:J7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7744 7y4l:J7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7745 7y4l:J8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7746 7y4l:J8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7747 7y4l:J8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7748 7y4l:J8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7749 7y4l:J9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7750 7y4l:J9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7751 7y4l:J9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7752 7y4l:JA (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7753 7y4l:JA (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7754 7y4l:JB (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7755 7y4l:JC (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7756 7y4l:JD (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7757 7y4l:JE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7758 7y4l:JF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7759 7y4l:JF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7760 7y4l:JF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7761 7y4l:JF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7762 7y4l:JG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7763 7y4l:JG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7764 7y4l:JG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7765 7y4l:JG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7766 7y4l:JH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7767 7y4l:JH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7768 7y4l:JH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7769 7y4l:JH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7770 7y4l:JI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7771 7y4l:JI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7772 7y4l:JI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7773 7y4l:JI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7774 7y4l:JJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7775 7y4l:JJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7776 7y4l:JJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7777 7y4l:JK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7778 7y4l:JK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7779 7y4l:JK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7780 7y4l:JK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7781 7y4l:K1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7782 7y4l:K1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7783 7y4l:K1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7784 7y4l:K1 (3.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    7785 7y4l:K4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7786 7y4l:K4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7787 7y4l:K4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7788 7y4l:K4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7789 7y4l:K5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7790 7y4l:K5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7791 7y4l:K5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7792 7y4l:K5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7793 7y4l:K7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7794 7y4l:K7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7795 7y4l:K8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7796 7y4l:K8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7797 7y4l:K9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7798 7y4l:K9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7799 7y4l:K9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7800 7y4l:KA (3.3) BS01 PEB ? N/A A0A5J4YJY8 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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