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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 7y4l:CI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7402 7y4l:CI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7403 7y4l:CJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7404 7y4l:CJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7405 7y4l:CJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7406 7y4l:CJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7407 7y4l:CK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7408 7y4l:CK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7409 7y4l:CK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7410 7y4l:CK (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7411 7y4l:D1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7412 7y4l:D1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7413 7y4l:D1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7414 7y4l:D1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7415 7y4l:D2 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7416 7y4l:D4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7417 7y4l:D4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7418 7y4l:D4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7419 7y4l:D4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7420 7y4l:D5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7421 7y4l:D5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7422 7y4l:D5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7423 7y4l:D5 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7424 7y4l:D6 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7425 7y4l:D7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7426 7y4l:D7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7427 7y4l:D7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7428 7y4l:D7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7429 7y4l:D8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7430 7y4l:D8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7431 7y4l:D8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7432 7y4l:D9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7433 7y4l:D9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7434 7y4l:D9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7435 7y4l:D9 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7436 7y4l:DA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7437 7y4l:DA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7438 7y4l:DA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7439 7y4l:DB (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7440 7y4l:DC (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7441 7y4l:DD (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7442 7y4l:DE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7443 7y4l:DF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7444 7y4l:DF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7445 7y4l:DF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7446 7y4l:DG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7447 7y4l:DG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7448 7y4l:DG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7449 7y4l:DG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7450 7y4l:DH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7451 7y4l:DH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7452 7y4l:DH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7453 7y4l:DH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7454 7y4l:DI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7455 7y4l:DI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7456 7y4l:DI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7457 7y4l:DJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7458 7y4l:DJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7459 7y4l:DJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7460 7y4l:DJ (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7461 7y4l:DK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7462 7y4l:DK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7463 7y4l:DK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7464 7y4l:DK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7465 7y4l:E1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7466 7y4l:E1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7467 7y4l:E1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7468 7y4l:E2 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7469 7y4l:E4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7470 7y4l:E4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7471 7y4l:E4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7472 7y4l:E4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7473 7y4l:E5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7474 7y4l:E5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7475 7y4l:E5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7476 7y4l:E5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7477 7y4l:E6 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7478 7y4l:E7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7479 7y4l:E7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7480 7y4l:E7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7481 7y4l:E8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7482 7y4l:E8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7483 7y4l:E9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7484 7y4l:E9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7485 7y4l:E9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7486 7y4l:EA (3.3) BS01 PEB ? N/A A0A5J4YXP2 36922595
    7487 7y4l:EA (3.3) BS02 PEB ? N/A A0A5J4YXP2 36922595
    7488 7y4l:EB (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7489 7y4l:EC (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7490 7y4l:ED (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7491 7y4l:EE (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7492 7y4l:EF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7493 7y4l:EF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7494 7y4l:EG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7495 7y4l:EG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7496 7y4l:EG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7497 7y4l:EH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7498 7y4l:EH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7499 7y4l:EH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7500 7y4l:EH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7501 7y4l:EI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7502 7y4l:EI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7503 7y4l:EI (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7504 7y4l:EI (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7505 7y4l:EJ (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7506 7y4l:EJ (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7507 7y4l:EJ (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7508 7y4l:EJ (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7509 7y4l:EK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7510 7y4l:EK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7511 7y4l:EK (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7512 7y4l:F1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7513 7y4l:F1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7514 7y4l:F1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7515 7y4l:F1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7516 7y4l:F2 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7517 7y4l:F2 (3.3) BS02 PEB ? GO:0009507 ... P37208 36922595
    7518 7y4l:F4 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7519 7y4l:F4 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7520 7y4l:F4 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7521 7y4l:F4 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7522 7y4l:F5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7523 7y4l:F5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7524 7y4l:F5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7525 7y4l:F6 (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7526 7y4l:F7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7527 7y4l:F7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7528 7y4l:F7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7529 7y4l:F7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7530 7y4l:F8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7531 7y4l:F8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7532 7y4l:F8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7533 7y4l:F8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7534 7y4l:F9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7535 7y4l:F9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7536 7y4l:F9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7537 7y4l:F9 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7538 7y4l:FA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7539 7y4l:FA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7540 7y4l:FA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7541 7y4l:FB (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7542 7y4l:FC (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7543 7y4l:FC (3.3) BS02 PEB ? GO:0009507 ... P37208 36922595
    7544 7y4l:FD (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7545 7y4l:FE (3.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    7546 7y4l:FF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7547 7y4l:FF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7548 7y4l:FF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7549 7y4l:FF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7550 7y4l:FG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7551 7y4l:FG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7552 7y4l:FG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7553 7y4l:FH (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7554 7y4l:FH (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7555 7y4l:FH (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7556 7y4l:FH (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7557 7y4l:FI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7558 7y4l:FI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7559 7y4l:FI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7560 7y4l:FI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7561 7y4l:FJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7562 7y4l:FJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7563 7y4l:FJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7564 7y4l:FK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7565 7y4l:FK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7566 7y4l:FK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7567 7y4l:FK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7568 7y4l:G1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7569 7y4l:G1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7570 7y4l:G1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7571 7y4l:G1 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7572 7y4l:G2 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7573 7y4l:G4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7574 7y4l:G4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7575 7y4l:G4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7576 7y4l:G4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7577 7y4l:G5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7578 7y4l:G5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7579 7y4l:G5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7580 7y4l:G5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7581 7y4l:G6 (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7582 7y4l:G6 (3.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    7583 7y4l:G7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7584 7y4l:G7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7585 7y4l:G7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7586 7y4l:G8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7587 7y4l:G8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7588 7y4l:G8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7589 7y4l:G9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7590 7y4l:G9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7591 7y4l:G9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7592 7y4l:G9 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7593 7y4l:GA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7594 7y4l:GA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7595 7y4l:GA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7596 7y4l:GB (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7597 7y4l:GB (3.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    7598 7y4l:GC (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7599 7y4l:GD (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7600 7y4l:GE (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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