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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7201 7y4l:A4 (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    7202 7y4l:A4 (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    7203 7y4l:A4 (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    7204 7y4l:A4 (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    7205 7y4l:A4 (3.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    7206 7y4l:A4 (3.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    7207 7y4l:A4 (3.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    7208 7y4l:A5 (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    7209 7y4l:A5 (3.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    7210 7y4l:A5 (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    7211 7y4l:A5 (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    7212 7y4l:A5 (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7213 7y4l:A5 (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7214 7y4l:A5 (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7215 7y4l:A5 (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7216 7y4l:A5 (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7217 7y4l:A6 (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    7218 7y4l:A6 (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    7219 7y4l:A6 (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    7220 7y4l:A6 (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7221 7y4l:A6 (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7222 7y4l:A6 (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    7223 7y4l:A6 (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7224 7y4l:A6 (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7225 7y4l:A6 (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7226 7y4l:A6 (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    7227 7y4l:A7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7228 7y4l:A7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7229 7y4l:A7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7230 7y4l:A8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7231 7y4l:A8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7232 7y4l:A9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7233 7y4l:A9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7234 7y4l:A9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7235 7y4l:AA (3.3) BS01 PEB ? N/A A0A5J4YXP2 36922595
    7236 7y4l:AA (3.3) BS02 PEB ? N/A A0A5J4YXP2 36922595
    7237 7y4l:AB (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    7238 7y4l:AB (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    7239 7y4l:AB (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    7240 7y4l:AB (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7241 7y4l:AB (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7242 7y4l:AB (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    7243 7y4l:AB (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7244 7y4l:AB (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7245 7y4l:AB (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7246 7y4l:AB (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    7247 7y4l:AC (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    7248 7y4l:AC (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    7249 7y4l:AC (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    7250 7y4l:AC (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7251 7y4l:AC (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7252 7y4l:AC (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    7253 7y4l:AC (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7254 7y4l:AC (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7255 7y4l:AC (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7256 7y4l:AC (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    7257 7y4l:AD (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    7258 7y4l:AD (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    7259 7y4l:AD (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    7260 7y4l:AD (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7261 7y4l:AD (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7262 7y4l:AD (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    7263 7y4l:AD (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7264 7y4l:AD (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7265 7y4l:AD (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7266 7y4l:AD (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    7267 7y4l:AD (3.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    7268 7y4l:AE (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    7269 7y4l:AE (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    7270 7y4l:AE (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    7271 7y4l:AE (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7272 7y4l:AE (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7273 7y4l:AE (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    7274 7y4l:AE (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7275 7y4l:AE (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7276 7y4l:AE (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7277 7y4l:AE (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    7278 7y4l:AE (3.3) BS13 PEB ? N/A A0A5J4YX19 36922595
    7279 7y4l:AF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7280 7y4l:AF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7281 7y4l:AG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7282 7y4l:AG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7283 7y4l:AG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7284 7y4l:AH (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    7285 7y4l:AH (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    7286 7y4l:AH (3.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    7287 7y4l:AH (3.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    7288 7y4l:AH (3.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    7289 7y4l:AH (3.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    7290 7y4l:AH (3.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    7291 7y4l:AH (3.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    7292 7y4l:AH (3.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    7293 7y4l:AI (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7294 7y4l:AI (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7295 7y4l:AJ (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    7296 7y4l:AJ (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    7297 7y4l:AJ (3.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    7298 7y4l:AJ (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7299 7y4l:AJ (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7300 7y4l:AJ (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    7301 7y4l:AJ (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7302 7y4l:AJ (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7303 7y4l:AJ (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7304 7y4l:AK (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7305 7y4l:AK (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7306 7y4l:B1 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7307 7y4l:B1 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7308 7y4l:B1 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7309 7y4l:B1 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7310 7y4l:B4 (3.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    7311 7y4l:B4 (3.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    7312 7y4l:B4 (3.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    7313 7y4l:B4 (3.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    7314 7y4l:B4 (3.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    7315 7y4l:B4 (3.3) BS08 PEB ? N/A A0A5J4YZH3 36922595
    7316 7y4l:B4 (3.3) BS09 PEB ? N/A A0A5J4YZH3 36922595
    7317 7y4l:B4 (3.3) BS10 PEB ? N/A A0A5J4YZH3 36922595
    7318 7y4l:B4 (3.3) BS11 PEB ? N/A A0A5J4YZH3 36922595
    7319 7y4l:B5 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7320 7y4l:B5 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7321 7y4l:B5 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7322 7y4l:B7 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7323 7y4l:B7 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7324 7y4l:B7 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7325 7y4l:B7 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7326 7y4l:B8 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7327 7y4l:B8 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7328 7y4l:B8 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7329 7y4l:B8 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7330 7y4l:B9 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7331 7y4l:B9 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7332 7y4l:B9 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7333 7y4l:B9 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7334 7y4l:BA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7335 7y4l:BA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7336 7y4l:BA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7337 7y4l:BF (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7338 7y4l:BF (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7339 7y4l:BF (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7340 7y4l:BF (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7341 7y4l:BG (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7342 7y4l:BG (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7343 7y4l:BG (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7344 7y4l:BG (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7345 7y4l:BH (3.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    7346 7y4l:BH (3.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    7347 7y4l:BH (3.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    7348 7y4l:BH (3.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    7349 7y4l:BH (3.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    7350 7y4l:BH (3.3) BS08 PEB ? N/A A0A5J4YZH3 36922595
    7351 7y4l:BH (3.3) BS09 PEB ? N/A A0A5J4YZH3 36922595
    7352 7y4l:BI (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7353 7y4l:BI (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7354 7y4l:BI (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7355 7y4l:BI (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7356 7y4l:BI (3.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    7357 7y4l:BJ (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7358 7y4l:BJ (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7359 7y4l:BJ (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7360 7y4l:BK (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7361 7y4l:BK (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7362 7y4l:BK (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7363 7y4l:BK (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7364 7y4l:C1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7365 7y4l:C1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7366 7y4l:C1 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7367 7y4l:C1 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7368 7y4l:C4 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7369 7y4l:C4 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7370 7y4l:C4 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7371 7y4l:C4 (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    7372 7y4l:C5 (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7373 7y4l:C5 (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7374 7y4l:C5 (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7375 7y4l:C5 (3.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7376 7y4l:C7 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7377 7y4l:C7 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7378 7y4l:C7 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7379 7y4l:C8 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7380 7y4l:C8 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7381 7y4l:C8 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7382 7y4l:C9 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7383 7y4l:C9 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7384 7y4l:C9 (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7385 7y4l:CA (3.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7386 7y4l:CA (3.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7387 7y4l:CA (3.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7388 7y4l:CD (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7389 7y4l:CD (3.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    7390 7y4l:CE (3.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    7391 7y4l:CF (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7392 7y4l:CF (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7393 7y4l:CF (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7394 7y4l:CG (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7395 7y4l:CG (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7396 7y4l:CG (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7397 7y4l:CH (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7398 7y4l:CH (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7399 7y4l:CH (3.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7400 7y4l:CH (3.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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