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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 7lj0:B (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    7002 7lj0:B (2.8) BS04 PEB ? GO:0009507 ... P11393 33767155
    7003 7ssf:A (1.45) BS01 PEB N/A GO:0030089 ... N/A N/A
    7004 7ssf:A (1.45) BS03 PEB N/A GO:0030089 ... N/A N/A
    7005 7ssf:A (1.45) BS04 PEB N/A GO:0030089 ... N/A N/A
    7006 7ssf:A (1.45) BS05 PEB N/A GO:0030089 ... N/A N/A
    7007 7ssf:B (1.45) BS02 PEB ? GO:0009507 ... U5T8W0 N/A
    7008 7ssf:B (1.45) BS03 PEB ? GO:0009507 ... U5T8W0 N/A
    7009 7ssf:C (1.45) BS01 PEB N/A GO:0030089 ... N/A N/A
    7010 7ssf:C (1.45) BS02 PEB N/A GO:0030089 ... N/A N/A
    7011 7ssf:C (1.45) BS03 PEB N/A GO:0030089 ... N/A N/A
    7012 7ssf:C (1.45) BS04 PEB N/A GO:0030089 ... N/A N/A
    7013 7ssf:D (1.45) BS01 PEB ? GO:0009507 ... U5T8W0 N/A
    7014 7ssf:D (1.45) BS03 PEB ? GO:0009507 ... U5T8W0 N/A
    7015 7ssf:D (1.45) BS04 PEB ? GO:0009507 ... U5T8W0 N/A
    7016 7ssf:E (1.45) BS01 PEB N/A GO:0030089 ... N/A N/A
    7017 7ssf:E (1.45) BS03 PEB N/A GO:0030089 ... N/A N/A
    7018 7ssf:E (1.45) BS04 PEB N/A GO:0030089 ... N/A N/A
    7019 7ssf:E (1.45) BS05 PEB N/A GO:0030089 ... N/A N/A
    7020 7ssf:F (1.45) BS02 PEB ? GO:0009507 ... U5T8W0 N/A
    7021 7ssf:F (1.45) BS03 PEB ? GO:0009507 ... U5T8W0 N/A
    7022 7ssf:G (1.45) BS01 PEB N/A GO:0030089 ... N/A N/A
    7023 7ssf:G (1.45) BS02 PEB N/A GO:0030089 ... N/A N/A
    7024 7ssf:G (1.45) BS04 PEB N/A GO:0030089 ... N/A N/A
    7025 7ssf:G (1.45) BS05 PEB N/A GO:0030089 ... N/A N/A
    7026 7ssf:H (1.45) BS02 PEB ? GO:0009507 ... U5T8W0 N/A
    7027 7ssf:H (1.45) BS03 PEB ? GO:0009507 ... U5T8W0 N/A
    7028 7sut:A (1.49) BS03 PEB ? GO:0030089 ... A0A7S0U215 37957226
    7029 7sut:A (1.49) BS04 PEB ? GO:0030089 ... A0A7S0U215 37957226
    7030 7sut:B (1.49) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    7031 7sut:B (1.49) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    7032 7sut:C (1.49) BS03 PEB N/A GO:0030089 ... N/A 37957226
    7033 7sut:D (1.49) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    7034 7sut:E (1.49) BS03 PEB ? GO:0030089 ... A0A7S0U215 37957226
    7035 7sut:E (1.49) BS04 PEB ? GO:0030089 ... A0A7S0U215 37957226
    7036 7sut:F (1.49) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    7037 7sut:F (1.49) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    7038 7sut:G (1.49) BS02 PEB N/A GO:0030089 ... N/A 37957226
    7039 7sut:H (1.49) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    7040 7t8s:A (2.0) BS01 PEB ? GO:0009536 ... A0A222AH92 36721353
    7041 7t8s:B (2.0) BS01 PEB ? GO:0030089 ... A0A7S0TJJ1 36721353
    7042 7t8s:C (2.0) BS02 PEB ? GO:0009536 ... A0A222AH92 36721353
    7043 7t8s:D (2.0) BS01 PEB ? GO:0030089 ... A0A7S0UC19 36721353
    7044 7t8s:E (2.0) BS01 PEB ? GO:0009536 ... A0A222AH92 36721353
    7045 7t8s:F (2.0) BS01 PEB ? GO:0030089 ... A0A7S0TJJ1 36721353
    7046 7t8s:G (2.0) BS02 PEB ? GO:0009536 ... A0A222AH92 36721353
    7047 7t8s:H (2.0) BS01 PEB ? GO:0030089 ... A0A7S0UC19 36721353
    7048 7t8s:I (2.0) BS01 PEB ? GO:0009536 ... A0A222AH92 36721353
    7049 7t8s:J (2.0) BS01 PEB ? GO:0030089 ... A0A7S0TJJ1 36721353
    7050 7t8s:K (2.0) BS02 PEB ? GO:0009536 ... A0A222AH92 36721353
    7051 7t8s:L (2.0) BS01 PEB ? GO:0030089 ... A0A7S0UC19 36721353
    7052 7t8s:M (2.0) BS01 PEB ? GO:0009536 ... A0A222AH92 36721353
    7053 7t8s:N (2.0) BS01 PEB ? GO:0030089 ... A0A7S0TJJ1 36721353
    7054 7t8s:O (2.0) BS02 PEB ? GO:0009536 ... A0A222AH92 36721353
    7055 7t8s:P (2.0) BS01 PEB ? GO:0030089 ... A0A7S0UC19 36721353
    7056 7tja:A (1.96) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7057 7tja:A (1.96) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7058 7tja:A (1.96) BS05 PEB ? GO:0030089 ... A0A067YS87 35350600
    7059 7tja:B (1.96) BS01 PEB N/A GO:0015979 ... N/A 35350600
    7060 7tja:B (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7061 7tja:B (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7062 7tja:C (1.96) BS04 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7063 7tja:D (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7064 7tja:D (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7065 7tja:D (1.96) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7066 7tja:E (1.96) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7067 7tja:E (1.96) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7068 7tja:E (1.96) BS05 PEB ? GO:0030089 ... A0A067YS87 35350600
    7069 7tja:F (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7070 7tja:F (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7071 7tja:F (1.96) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7072 7tja:F (1.96) BS05 PEB N/A GO:0015979 ... N/A 35350600
    7073 7tja:G (1.96) BS03 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7074 7tja:G (1.96) BS04 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7075 7tja:H (1.96) BS01 PEB N/A GO:0015979 ... N/A 35350600
    7076 7tja:H (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7077 7tja:H (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7078 7tja:I (1.96) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7079 7tja:I (1.96) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7080 7tja:I (1.96) BS05 PEB ? GO:0030089 ... A0A067YS87 35350600
    7081 7tja:J (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7082 7tja:J (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7083 7tja:J (1.96) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7084 7tja:K (1.96) BS03 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7085 7tja:K (1.96) BS04 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7086 7tja:L (1.96) BS01 PEB N/A GO:0015979 ... N/A 35350600
    7087 7tja:L (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7088 7tja:L (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7089 7tja:M (1.96) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7090 7tja:M (1.96) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7091 7tja:M (1.96) BS05 PEB ? GO:0030089 ... A0A067YS87 35350600
    7092 7tja:N (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7093 7tja:N (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7094 7tja:N (1.96) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7095 7tja:O (1.96) BS03 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7096 7tja:O (1.96) BS04 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7097 7tja:P (1.96) BS01 PEB N/A GO:0015979 ... N/A 35350600
    7098 7tja:P (1.96) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7099 7tja:P (1.96) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7100 7tja:Q (1.96) BS03 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7101 7tja:R (1.96) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7102 7tja:R (1.96) BS05 PEB ? GO:0030089 ... A0A067YS87 35350600
    7103 7tlf:A (2.8) BS02 PEB ? GO:0030089 ... A0A067YS87 35350600
    7104 7tlf:A (2.8) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7105 7tlf:A (2.8) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7106 7tlf:B (2.8) BS01 PEB N/A GO:0015979 ... N/A 35350600
    7107 7tlf:B (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7108 7tlf:B (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7109 7tlf:C (2.8) BS02 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7110 7tlf:D (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7111 7tlf:D (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7112 7tlf:D (2.8) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7113 7tlf:D (2.8) BS05 PEB N/A GO:0015979 ... N/A 35350600
    7114 7tlf:E (2.8) BS02 PEB ? GO:0030089 ... A0A067YS87 35350600
    7115 7tlf:E (2.8) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7116 7tlf:E (2.8) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7117 7tlf:F (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7118 7tlf:F (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7119 7tlf:F (2.8) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7120 7tlf:G (2.8) BS03 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7121 7tlf:G (2.8) BS04 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7122 7tlf:H (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7123 7tlf:H (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7124 7tlf:H (2.8) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7125 7tlf:I (2.8) BS02 PEB ? GO:0030089 ... A0A067YS87 35350600
    7126 7tlf:I (2.8) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7127 7tlf:I (2.8) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7128 7tlf:I (2.8) BS05 PEB ? GO:0030089 ... A0A067YS87 35350600
    7129 7tlf:J (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7130 7tlf:J (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7131 7tlf:J (2.8) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7132 7tlf:K (2.8) BS03 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7133 7tlf:K (2.8) BS04 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7134 7tlf:L (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7135 7tlf:L (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7136 7tlf:L (2.8) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7137 7tlf:M (2.8) BS02 PEB ? GO:0030089 ... A0A067YS87 35350600
    7138 7tlf:M (2.8) BS03 PEB ? GO:0030089 ... A0A067YS87 35350600
    7139 7tlf:M (2.8) BS04 PEB ? GO:0030089 ... A0A067YS87 35350600
    7140 7tlf:N (2.8) BS01 PEB N/A GO:0015979 ... N/A 35350600
    7141 7tlf:N (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7142 7tlf:N (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7143 7tlf:N (2.8) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7144 7tlf:O (2.8) BS03 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7145 7tlf:O (2.8) BS04 PEB ? GO:0030089 ... A0A067YRY3 35350600
    7146 7tlf:P (2.8) BS02 PEB N/A GO:0015979 ... N/A 35350600
    7147 7tlf:P (2.8) BS03 PEB N/A GO:0015979 ... N/A 35350600
    7148 7tlf:P (2.8) BS04 PEB N/A GO:0015979 ... N/A 35350600
    7149 7y1a:1 (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7150 7y1a:1 (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7151 7y1a:1 (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7152 7y1a:A (6.3) BS01 PEB N/A N/A N/A 36922595
    7153 7y1a:A (6.3) BS02 PEB N/A N/A N/A 36922595
    7154 7y1a:p (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7155 7y1a:p (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7156 7y1a:p (6.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7157 7y1a:q (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7158 7y1a:q (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7159 7y1a:q (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7160 7y1a:r (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7161 7y1a:r (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7162 7y1a:s (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7163 7y1a:s (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7164 7y1a:s (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7165 7y1a:t (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7166 7y1a:t (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7167 7y1a:u (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7168 7y1a:u (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7169 7y1a:u (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7170 7y1a:v (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7171 7y1a:v (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7172 7y1a:w (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7173 7y1a:w (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7174 7y1a:w (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7175 7y1a:w (6.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    7176 7y1a:x (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7177 7y1a:x (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7178 7y1a:y (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    7179 7y1a:y (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    7180 7y1a:y (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    7181 7y1a:z (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7182 7y1a:z (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7183 7y1a:z (6.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    7184 7y4l:23 (3.3) BS01 PEB ? N/A A0A5J4YTV6 36922595
    7185 7y4l:33 (3.3) BS01 PEB ? N/A A0A5J4Z2M2 36922595
    7186 7y4l:43 (3.3) BS01 PEB ? GO:0005615 ... A0A5J4ZA95 36922595
    7187 7y4l:A1 (3.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    7188 7y4l:A1 (3.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    7189 7y4l:A2 (3.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    7190 7y4l:A2 (3.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    7191 7y4l:A2 (3.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    7192 7y4l:A2 (3.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    7193 7y4l:A2 (3.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    7194 7y4l:A2 (3.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    7195 7y4l:A2 (3.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    7196 7y4l:A2 (3.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    7197 7y4l:A2 (3.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    7198 7y4l:A2 (3.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    7199 7y4l:A4 (3.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    7200 7y4l:A4 (3.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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