Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5nb3:T (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    402 5nb3:T (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    403 5nb3:U (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    404 5nb3:U (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    405 5nb3:U (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    406 5nb3:U (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    407 5nb3:V (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    408 5nb3:V (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    409 5nb3:V (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    410 5nb3:V (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    411 5nb3:W (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    412 5nb3:W (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    413 5nb3:W (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    414 5nb3:W (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    415 5nb3:X (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    416 5nb3:X (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    417 5nb3:X (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    418 5nb3:X (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    419 5nb4:A (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    420 5nb4:A (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    421 5nb4:A (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    422 5nb4:A (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    423 5nb4:B (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    424 5nb4:B (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    425 5nb4:B (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    426 5nb4:B (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    427 5nb4:C (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    428 5nb4:C (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    429 5nb4:C (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    430 5nb4:C (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    431 5nb4:D (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    432 5nb4:D (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    433 5nb4:D (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    434 5nb4:D (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    435 5nb4:E (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    436 5nb4:E (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    437 5nb4:E (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    438 5nb4:E (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    439 5nb4:F (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    440 5nb4:F (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    441 5nb4:F (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    442 5nb4:F (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    443 5nb4:G (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    444 5nb4:G (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    445 5nb4:G (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    446 5nb4:G (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    447 5nb4:H (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    448 5nb4:H (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    449 5nb4:H (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    450 5nb4:H (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    451 5nb4:I (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    452 5nb4:I (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    453 5nb4:I (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    454 5nb4:I (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    455 5nb4:J (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    456 5nb4:J (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    457 5nb4:J (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    458 5nb4:J (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    459 5nb4:K (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    460 5nb4:K (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    461 5nb4:K (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    462 5nb4:K (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    463 5nb4:L (1.14) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    464 5nb4:L (1.14) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    465 5nb4:L (1.14) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    466 5nb4:L (1.14) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    467 5nb4:M (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    468 5nb4:M (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    469 5nb4:M (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    470 5nb4:M (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    471 5nb4:N (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    472 5nb4:N (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    473 5nb4:N (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    474 5nb4:N (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    475 5nb4:O (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    476 5nb4:O (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    477 5nb4:O (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    478 5nb4:O (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    479 5nb4:P (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    480 5nb4:P (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    481 5nb4:P (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    482 5nb4:P (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    483 5nb4:Q (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    484 5nb4:Q (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    485 5nb4:Q (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    486 5nb4:Q (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    487 5nb4:R (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    488 5nb4:R (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    489 5nb4:R (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    490 5nb4:R (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    491 5nb4:S (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    492 5nb4:S (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    493 5nb4:S (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    494 5nb4:S (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    495 5nb4:T (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    496 5nb4:T (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    497 5nb4:T (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    498 5nb4:T (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    499 5nb4:U (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    500 5nb4:U (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    501 5nb4:U (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    502 5nb4:U (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    503 5nb4:V (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    504 5nb4:V (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    505 5nb4:V (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    506 5nb4:V (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    507 5nb4:W (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    508 5nb4:W (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    509 5nb4:W (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    510 5nb4:W (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    511 5nb4:X (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    512 5nb4:X (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    513 5nb4:X (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    514 5nb4:X (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    515 5y6p:14 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    516 5y6p:14 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    517 5y6p:14 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    518 5y6p:24 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    519 5y6p:24 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    520 5y6p:24 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    521 5y6p:24 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    522 5y6p:24 (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    523 5y6p:24 (3.5) BS06 PEB N/A GO:0015979 ... N/A 29045394
    524 5y6p:34 (3.5) BS01 PEB N/A N/A N/A 29045394
    525 5y6p:34 (3.5) BS02 PEB N/A N/A N/A 29045394
    526 5y6p:34 (3.5) BS03 PEB N/A N/A N/A 29045394
    527 5y6p:34 (3.5) BS04 PEB N/A N/A N/A 29045394
    528 5y6p:34 (3.5) BS05 PEB N/A N/A N/A 29045394
    529 5y6p:34 (3.5) BS06 PEB N/A N/A N/A 29045394
    530 5y6p:34 (3.5) BS07 PEB N/A N/A N/A 29045394
    531 5y6p:34 (3.5) BS11 PEB N/A N/A N/A 29045394
    532 5y6p:34 (3.5) BS12 PEB N/A N/A N/A 29045394
    533 5y6p:44 (3.5) BS01 PEB N/A N/A N/A 29045394
    534 5y6p:44 (3.5) BS02 PEB N/A N/A N/A 29045394
    535 5y6p:44 (3.5) BS03 PEB N/A N/A N/A 29045394
    536 5y6p:44 (3.5) BS04 PEB N/A N/A N/A 29045394
    537 5y6p:44 (3.5) BS05 PEB N/A N/A N/A 29045394
    538 5y6p:44 (3.5) BS06 PEB N/A N/A N/A 29045394
    539 5y6p:44 (3.5) BS07 PEB N/A N/A N/A 29045394
    540 5y6p:A1 (3.5) BS01 PEB N/A N/A N/A 29045394
    541 5y6p:A2 (3.5) BS01 PEB N/A N/A N/A 29045394
    542 5y6p:A2 (3.5) BS02 PEB N/A N/A N/A 29045394
    543 5y6p:A2 (3.5) BS03 PEB N/A N/A N/A 29045394
    544 5y6p:A2 (3.5) BS07 PEB N/A N/A N/A 29045394
    545 5y6p:A2 (3.5) BS08 PEB N/A N/A N/A 29045394
    546 5y6p:A2 (3.5) BS09 PEB N/A N/A N/A 29045394
    547 5y6p:A2 (3.5) BS10 PEB N/A N/A N/A 29045394
    548 5y6p:A2 (3.5) BS11 PEB N/A N/A N/A 29045394
    549 5y6p:A2 (3.5) BS12 PEB N/A N/A N/A 29045394
    550 5y6p:A2 (3.5) BS13 PEB N/A N/A N/A 29045394
    551 5y6p:A3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    552 5y6p:A3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    553 5y6p:A4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    554 5y6p:A4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    555 5y6p:A4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    556 5y6p:A5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    557 5y6p:A5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    558 5y6p:A6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    559 5y6p:A6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    560 5y6p:A7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    561 5y6p:A8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    562 5y6p:A8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    563 5y6p:A8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    564 5y6p:A9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    565 5y6p:A9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    566 5y6p:A9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    567 5y6p:B1 (3.5) BS01 PEB N/A N/A N/A 29045394
    568 5y6p:B2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    569 5y6p:B2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    570 5y6p:B2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    571 5y6p:B2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    572 5y6p:B3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    573 5y6p:B3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    574 5y6p:B3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    575 5y6p:B4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    576 5y6p:B4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    577 5y6p:B4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    578 5y6p:B5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    579 5y6p:B5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    580 5y6p:B5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    581 5y6p:B6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    582 5y6p:B6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    583 5y6p:B6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    584 5y6p:B7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    585 5y6p:B7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    586 5y6p:B7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    587 5y6p:B8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    588 5y6p:B8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    589 5y6p:B8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    590 5y6p:B9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    591 5y6p:B9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    592 5y6p:B9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    593 5y6p:C1 (3.5) BS01 PEB N/A N/A N/A 29045394
    594 5y6p:C2 (3.5) BS01 PEB N/A N/A N/A 29045394
    595 5y6p:C2 (3.5) BS02 PEB N/A N/A N/A 29045394
    596 5y6p:C2 (3.5) BS03 PEB N/A N/A N/A 29045394
    597 5y6p:C2 (3.5) BS04 PEB N/A N/A N/A 29045394
    598 5y6p:C2 (3.5) BS05 PEB N/A N/A N/A 29045394
    599 5y6p:C2 (3.5) BS06 PEB N/A N/A N/A 29045394
    600 5y6p:C2 (3.5) BS07 PEB N/A N/A N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218