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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 7ezx:B8 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5202 7ezx:BA (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5203 7ezx:BA (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5204 7ezx:BA (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5205 7ezx:BB (3.0) BS01 PEB ? N/A A0A5J4YZH3 N/A
    5206 7ezx:BB (3.0) BS03 PEB ? N/A A0A5J4YZH3 N/A
    5207 7ezx:BB (3.0) BS04 PEB ? N/A A0A5J4YZH3 N/A
    5208 7ezx:BB (3.0) BS05 PEB ? N/A A0A5J4YZH3 N/A
    5209 7ezx:BB (3.0) BS07 PEB ? N/A A0A5J4YZH3 N/A
    5210 7ezx:BB (3.0) BS08 PEB ? N/A A0A5J4YZH3 N/A
    5211 7ezx:BB (3.0) BS09 PEB ? N/A A0A5J4YZH3 N/A
    5212 7ezx:BB (3.0) BS10 PEB ? N/A A0A5J4YZH3 N/A
    5213 7ezx:BB (3.0) BS11 PEB ? N/A A0A5J4YZH3 N/A
    5214 7ezx:BC (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5215 7ezx:BC (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5216 7ezx:BC (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5217 7ezx:BC (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5218 7ezx:BD (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5219 7ezx:BD (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5220 7ezx:BE (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5221 7ezx:BE (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5222 7ezx:BE (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5223 7ezx:BE (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5224 7ezx:BG (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5225 7ezx:BG (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5226 7ezx:BG (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5227 7ezx:BJ (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5228 7ezx:BJ (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5229 7ezx:BJ (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5230 7ezx:BL (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5231 7ezx:BL (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5232 7ezx:BL (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5233 7ezx:BM (3.0) BS01 PEB ? N/A A0A5J4YZH3 N/A
    5234 7ezx:BM (3.0) BS03 PEB ? N/A A0A5J4YZH3 N/A
    5235 7ezx:BM (3.0) BS04 PEB ? N/A A0A5J4YZH3 N/A
    5236 7ezx:BM (3.0) BS05 PEB ? N/A A0A5J4YZH3 N/A
    5237 7ezx:BM (3.0) BS07 PEB ? N/A A0A5J4YZH3 N/A
    5238 7ezx:BM (3.0) BS08 PEB ? N/A A0A5J4YZH3 N/A
    5239 7ezx:BM (3.0) BS09 PEB ? N/A A0A5J4YZH3 N/A
    5240 7ezx:BM (3.0) BS10 PEB ? N/A A0A5J4YZH3 N/A
    5241 7ezx:BM (3.0) BS11 PEB ? N/A A0A5J4YZH3 N/A
    5242 7ezx:BN (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5243 7ezx:BN (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5244 7ezx:BN (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5245 7ezx:BO (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5246 7ezx:BO (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5247 7ezx:BO (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5248 7ezx:BQ (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5249 7ezx:BQ (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5250 7ezx:BQ (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5251 7ezx:C3 (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5252 7ezx:C3 (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5253 7ezx:C3 (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5254 7ezx:C4 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5255 7ezx:C4 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5256 7ezx:C4 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5257 7ezx:C4 (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5258 7ezx:C5 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5259 7ezx:C5 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5260 7ezx:C5 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5261 7ezx:C7 (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5262 7ezx:C8 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5263 7ezx:C8 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5264 7ezx:C8 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5265 7ezx:C9 (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5266 7ezx:CA (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5267 7ezx:CA (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5268 7ezx:CB (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5269 7ezx:CB (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5270 7ezx:CC (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5271 7ezx:CC (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5272 7ezx:CC (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5273 7ezx:CD (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5274 7ezx:CD (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5275 7ezx:CD (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5276 7ezx:CD (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5277 7ezx:CE (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5278 7ezx:CE (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5279 7ezx:CE (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5280 7ezx:CF (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5281 7ezx:CG (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5282 7ezx:CG (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5283 7ezx:CI (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5284 7ezx:CJ (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5285 7ezx:CJ (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5286 7ezx:CL (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5287 7ezx:CL (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5288 7ezx:CM (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5289 7ezx:CM (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5290 7ezx:CN (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5291 7ezx:CN (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5292 7ezx:CO (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5293 7ezx:CO (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5294 7ezx:CO (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5295 7ezx:CQ (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5296 7ezx:CQ (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5297 7ezx:D1 (3.0) BS01 PEB ? GO:0009507 ... W0RZB2 N/A
    5298 7ezx:D3 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5299 7ezx:D3 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5300 7ezx:D3 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5301 7ezx:D4 (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5302 7ezx:D4 (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5303 7ezx:D4 (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5304 7ezx:D5 (3.0) BS01 PEB ? N/A A0A5J4YX67 N/A
    5305 7ezx:D5 (3.0) BS02 PEB ? N/A A0A5J4YX67 N/A
    5306 7ezx:D7 (3.0) BS01 PEB ? GO:0009507 ... W0RZB2 N/A
    5307 7ezx:D8 (3.0) BS01 PEB ? N/A A0A5J4YX67 N/A
    5308 7ezx:D8 (3.0) BS02 PEB ? N/A A0A5J4YX67 N/A
    5309 7ezx:D9 (3.0) BS01 PEB ? GO:0009507 ... W0RZB2 N/A
    5310 7ezx:DA (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5311 7ezx:DA (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5312 7ezx:DA (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5313 7ezx:DA (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5314 7ezx:DB (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5315 7ezx:DB (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5316 7ezx:DB (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5317 7ezx:DC (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5318 7ezx:DC (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5319 7ezx:DC (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5320 7ezx:DD (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5321 7ezx:DD (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5322 7ezx:DD (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5323 7ezx:DE (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5324 7ezx:DE (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5325 7ezx:DE (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5326 7ezx:DF (3.0) BS01 PEB ? GO:0009507 ... W0RZB2 N/A
    5327 7ezx:DG (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5328 7ezx:DG (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5329 7ezx:DG (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5330 7ezx:DG (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5331 7ezx:DI (3.0) BS01 PEB ? GO:0009507 ... W0RZB2 N/A
    5332 7ezx:DJ (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5333 7ezx:DJ (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5334 7ezx:DJ (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5335 7ezx:DK (3.0) BS01 PEB ? GO:0009507 ... W0RZB2 N/A
    5336 7ezx:DL (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5337 7ezx:DL (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5338 7ezx:DL (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5339 7ezx:DM (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5340 7ezx:DM (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5341 7ezx:DM (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5342 7ezx:DN (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5343 7ezx:DN (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5344 7ezx:DN (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5345 7ezx:DN (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5346 7ezx:DO (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5347 7ezx:DO (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5348 7ezx:DO (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5349 7ezx:DQ (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5350 7ezx:DQ (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5351 7ezx:DQ (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5352 7ezx:DQ (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5353 7ezx:E1 (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5354 7ezx:E3 (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5355 7ezx:E3 (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5356 7ezx:E3 (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5357 7ezx:E4 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5358 7ezx:E4 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5359 7ezx:E4 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5360 7ezx:E4 (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5361 7ezx:E5 (3.0) BS01 PEB ? N/A A0A5J4YJY8 N/A
    5362 7ezx:E5 (3.0) BS02 PEB ? N/A A0A5J4YJY8 N/A
    5363 7ezx:E5 (3.0) BS03 PEB ? N/A A0A5J4YJY8 N/A
    5364 7ezx:E5 (3.0) BS04 PEB ? N/A A0A5J4YJY8 N/A
    5365 7ezx:E5 (3.0) BS05 PEB ? N/A A0A5J4YJY8 N/A
    5366 7ezx:E7 (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5367 7ezx:E7 (3.0) BS02 PEB ? GO:0009507 ... W0RYI4 N/A
    5368 7ezx:E8 (3.0) BS01 PEB ? N/A A0A5J4YJY8 N/A
    5369 7ezx:E8 (3.0) BS02 PEB ? N/A A0A5J4YJY8 N/A
    5370 7ezx:E8 (3.0) BS03 PEB ? N/A A0A5J4YJY8 N/A
    5371 7ezx:E8 (3.0) BS04 PEB ? N/A A0A5J4YJY8 N/A
    5372 7ezx:E8 (3.0) BS05 PEB ? N/A A0A5J4YJY8 N/A
    5373 7ezx:E9 (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5374 7ezx:EA (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5375 7ezx:EA (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5376 7ezx:EB (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5377 7ezx:EB (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5378 7ezx:EB (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5379 7ezx:EC (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5380 7ezx:EC (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5381 7ezx:EC (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5382 7ezx:ED (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5383 7ezx:ED (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5384 7ezx:ED (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5385 7ezx:ED (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    5386 7ezx:EE (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5387 7ezx:EE (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5388 7ezx:EE (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5389 7ezx:EF (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5390 7ezx:EG (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5391 7ezx:EG (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5392 7ezx:EG (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5393 7ezx:EI (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5394 7ezx:EJ (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5395 7ezx:EJ (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5396 7ezx:EK (3.0) BS01 PEB ? GO:0009507 ... W0RYI4 N/A
    5397 7ezx:EL (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5398 7ezx:EL (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5399 7ezx:EM (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5400 7ezx:EM (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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