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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 6kgx:yG (2.8) BS06 PEB N/A N/A N/A 32076272
    5002 6kgx:yG (2.8) BS07 PEB N/A N/A N/A 32076272
    5003 6kgx:z1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    5004 6kgx:z1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    5005 6kgx:z1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    5006 6kgx:z1 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    5007 6kgx:z4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    5008 6kgx:z4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    5009 6kgx:z4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    5010 6kgx:z4 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    5011 6kgx:zE (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    5012 6kgx:zE (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    5013 6kgx:zE (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    5014 6kgx:zE (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    5015 6kgx:zE (2.8) BS05 PEB N/A GO:0015979 ... N/A 32076272
    5016 6kgx:zG (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    5017 6kgx:zG (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    5018 6kgx:zG (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    5019 6kgx:zG (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    5020 6kgx:zG (2.8) BS05 PEB N/A GO:0015979 ... N/A 32076272
    5021 6ozb:A (1.8) BS01 PEB 2.7.13.3 GO:0006355 ... Q8YTL8 32591422
    5022 6ozb:B (1.8) BS01 PEB 2.7.13.3 GO:0006355 ... Q8YTL8 32591422
    5023 6ozb:C (1.8) BS01 PEB 2.7.13.3 GO:0006355 ... Q8YTL8 32591422
    5024 7ap5:AAA (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5025 7ap5:AAA (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5026 7ap5:AAA (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5027 7ap5:BBB (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5028 7ap5:BBB (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5029 7ap5:BBB (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5030 7ap5:CCC (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5031 7ap5:CCC (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5032 7ap5:CCC (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5033 7ap5:CCC (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    5034 7ap5:DDD (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5035 7ap5:DDD (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5036 7ap5:DDD (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5037 7ap5:EEE (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5038 7ap5:EEE (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5039 7ap5:EEE (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5040 7ap5:EEE (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    5041 7ap5:FFF (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5042 7ap5:FFF (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5043 7ap5:FFF (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5044 7ap5:GGG (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5045 7ap5:GGG (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5046 7ap5:GGG (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5047 7ap5:GGG (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    5048 7ap5:HHH (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5049 7ap5:HHH (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5050 7ap5:HHH (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5051 7ap5:III (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5052 7ap5:III (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5053 7ap5:III (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5054 7ap5:III (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    5055 7ap5:JJJ (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5056 7ap5:JJJ (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5057 7ap5:JJJ (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5058 7ap5:KKK (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5059 7ap5:KKK (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5060 7ap5:KKK (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5061 7ap5:KKK (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    5062 7ap5:LLL (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5063 7ap5:LLL (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5064 7ap5:LLL (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5065 7ap5:MMM (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5066 7ap5:MMM (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5067 7ap5:MMM (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    5068 7ap5:MMM (2.131) BS05 PEB N/A GO:0015979 ... N/A N/A
    5069 7ap5:NNN (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5070 7ap5:NNN (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5071 7ap5:NNN (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5072 7ap5:OOO (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5073 7ap5:OOO (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5074 7ap5:PPP (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5075 7ap5:PPP (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    5076 7ap5:PPP (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    5077 7ezx:2P (3.0) BS01 PEB ? N/A A0A5J4YTV6 N/A
    5078 7ezx:A1 (3.0) BS01 PEB ? N/A A0A5J4YX19 N/A
    5079 7ezx:A1 (3.0) BS02 PEB ? N/A A0A5J4YX19 N/A
    5080 7ezx:A1 (3.0) BS03 PEB ? N/A A0A5J4YX19 N/A
    5081 7ezx:A1 (3.0) BS06 PEB ? N/A A0A5J4YX19 N/A
    5082 7ezx:A1 (3.0) BS07 PEB ? N/A A0A5J4YX19 N/A
    5083 7ezx:A1 (3.0) BS08 PEB ? N/A A0A5J4YX19 N/A
    5084 7ezx:A1 (3.0) BS09 PEB ? N/A A0A5J4YX19 N/A
    5085 7ezx:A1 (3.0) BS10 PEB ? N/A A0A5J4YX19 N/A
    5086 7ezx:A1 (3.0) BS11 PEB ? N/A A0A5J4YX19 N/A
    5087 7ezx:A3 (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5088 7ezx:A3 (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5089 7ezx:A3 (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5090 7ezx:A5 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5091 7ezx:A5 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5092 7ezx:A5 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5093 7ezx:A7 (3.0) BS01 PEB ? N/A A0A5J4YX19 N/A
    5094 7ezx:A7 (3.0) BS04 PEB ? N/A A0A5J4YX19 N/A
    5095 7ezx:A7 (3.0) BS05 PEB ? N/A A0A5J4YX19 N/A
    5096 7ezx:A7 (3.0) BS06 PEB ? N/A A0A5J4YX19 N/A
    5097 7ezx:A7 (3.0) BS07 PEB ? N/A A0A5J4YX19 N/A
    5098 7ezx:A7 (3.0) BS08 PEB ? N/A A0A5J4YX19 N/A
    5099 7ezx:A7 (3.0) BS09 PEB ? N/A A0A5J4YX19 N/A
    5100 7ezx:A7 (3.0) BS10 PEB ? N/A A0A5J4YX19 N/A
    5101 7ezx:A7 (3.0) BS11 PEB ? N/A A0A5J4YX19 N/A
    5102 7ezx:A7 (3.0) BS12 PEB ? N/A A0A5J4YX19 N/A
    5103 7ezx:A8 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5104 7ezx:A8 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5105 7ezx:A8 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5106 7ezx:A9 (3.0) BS01 PEB ? N/A A0A5J4YX19 N/A
    5107 7ezx:A9 (3.0) BS04 PEB ? N/A A0A5J4YX19 N/A
    5108 7ezx:A9 (3.0) BS05 PEB ? N/A A0A5J4YX19 N/A
    5109 7ezx:A9 (3.0) BS06 PEB ? N/A A0A5J4YX19 N/A
    5110 7ezx:A9 (3.0) BS07 PEB ? N/A A0A5J4YX19 N/A
    5111 7ezx:A9 (3.0) BS08 PEB ? N/A A0A5J4YX19 N/A
    5112 7ezx:A9 (3.0) BS09 PEB ? N/A A0A5J4YX19 N/A
    5113 7ezx:A9 (3.0) BS10 PEB ? N/A A0A5J4YX19 N/A
    5114 7ezx:A9 (3.0) BS11 PEB ? N/A A0A5J4YX19 N/A
    5115 7ezx:A9 (3.0) BS12 PEB ? N/A A0A5J4YX19 N/A
    5116 7ezx:AA (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5117 7ezx:AA (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5118 7ezx:AA (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5119 7ezx:AA (3.0) BS04 PEB ? GO:0009507 ... E2IH77 N/A
    5120 7ezx:AB (3.0) BS01 PEB ? N/A A0A5J4YZM7 N/A
    5121 7ezx:AB (3.0) BS02 PEB ? N/A A0A5J4YZM7 N/A
    5122 7ezx:AB (3.0) BS03 PEB ? N/A A0A5J4YZM7 N/A
    5123 7ezx:AB (3.0) BS06 PEB ? N/A A0A5J4YZM7 N/A
    5124 7ezx:AB (3.0) BS07 PEB ? N/A A0A5J4YZM7 N/A
    5125 7ezx:AB (3.0) BS08 PEB ? N/A A0A5J4YZM7 N/A
    5126 7ezx:AB (3.0) BS09 PEB ? N/A A0A5J4YZM7 N/A
    5127 7ezx:AB (3.0) BS10 PEB ? N/A A0A5J4YZM7 N/A
    5128 7ezx:AC (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5129 7ezx:AC (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5130 7ezx:AC (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5131 7ezx:AC (3.0) BS04 PEB ? GO:0009507 ... E2IH77 N/A
    5132 7ezx:AE (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5133 7ezx:AE (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5134 7ezx:AE (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5135 7ezx:AE (3.0) BS04 PEB ? GO:0009507 ... E2IH77 N/A
    5136 7ezx:AF (3.0) BS01 PEB ? N/A A0A5J4YX19 N/A
    5137 7ezx:AF (3.0) BS04 PEB ? N/A A0A5J4YX19 N/A
    5138 7ezx:AF (3.0) BS05 PEB ? N/A A0A5J4YX19 N/A
    5139 7ezx:AF (3.0) BS06 PEB ? N/A A0A5J4YX19 N/A
    5140 7ezx:AF (3.0) BS07 PEB ? N/A A0A5J4YX19 N/A
    5141 7ezx:AF (3.0) BS08 PEB ? N/A A0A5J4YX19 N/A
    5142 7ezx:AF (3.0) BS09 PEB ? N/A A0A5J4YX19 N/A
    5143 7ezx:AF (3.0) BS10 PEB ? N/A A0A5J4YX19 N/A
    5144 7ezx:AF (3.0) BS11 PEB ? N/A A0A5J4YX19 N/A
    5145 7ezx:AG (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5146 7ezx:AG (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5147 7ezx:AG (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5148 7ezx:AI (3.0) BS01 PEB ? N/A A0A5J4YX19 N/A
    5149 7ezx:AI (3.0) BS04 PEB ? N/A A0A5J4YX19 N/A
    5150 7ezx:AI (3.0) BS05 PEB ? N/A A0A5J4YX19 N/A
    5151 7ezx:AI (3.0) BS06 PEB ? N/A A0A5J4YX19 N/A
    5152 7ezx:AI (3.0) BS07 PEB ? N/A A0A5J4YX19 N/A
    5153 7ezx:AI (3.0) BS08 PEB ? N/A A0A5J4YX19 N/A
    5154 7ezx:AI (3.0) BS09 PEB ? N/A A0A5J4YX19 N/A
    5155 7ezx:AI (3.0) BS10 PEB ? N/A A0A5J4YX19 N/A
    5156 7ezx:AI (3.0) BS11 PEB ? N/A A0A5J4YX19 N/A
    5157 7ezx:AJ (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5158 7ezx:AJ (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5159 7ezx:AJ (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5160 7ezx:AK (3.0) BS01 PEB ? N/A A0A5J4YX19 N/A
    5161 7ezx:AK (3.0) BS02 PEB ? N/A A0A5J4YX19 N/A
    5162 7ezx:AK (3.0) BS03 PEB ? N/A A0A5J4YX19 N/A
    5163 7ezx:AK (3.0) BS06 PEB ? N/A A0A5J4YX19 N/A
    5164 7ezx:AK (3.0) BS07 PEB ? N/A A0A5J4YX19 N/A
    5165 7ezx:AK (3.0) BS08 PEB ? N/A A0A5J4YX19 N/A
    5166 7ezx:AK (3.0) BS09 PEB ? N/A A0A5J4YX19 N/A
    5167 7ezx:AK (3.0) BS10 PEB ? N/A A0A5J4YX19 N/A
    5168 7ezx:AK (3.0) BS11 PEB ? N/A A0A5J4YX19 N/A
    5169 7ezx:AL (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5170 7ezx:AL (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5171 7ezx:AL (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5172 7ezx:AM (3.0) BS01 PEB ? N/A A0A5J4YZM7 N/A
    5173 7ezx:AM (3.0) BS02 PEB ? N/A A0A5J4YZM7 N/A
    5174 7ezx:AM (3.0) BS03 PEB ? N/A A0A5J4YZM7 N/A
    5175 7ezx:AM (3.0) BS06 PEB ? N/A A0A5J4YZM7 N/A
    5176 7ezx:AM (3.0) BS07 PEB ? N/A A0A5J4YZM7 N/A
    5177 7ezx:AM (3.0) BS08 PEB ? N/A A0A5J4YZM7 N/A
    5178 7ezx:AM (3.0) BS09 PEB ? N/A A0A5J4YZM7 N/A
    5179 7ezx:AM (3.0) BS10 PEB ? N/A A0A5J4YZM7 N/A
    5180 7ezx:AM (3.0) BS11 PEB ? N/A A0A5J4YZM7 N/A
    5181 7ezx:AN (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5182 7ezx:AN (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5183 7ezx:AN (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5184 7ezx:AN (3.0) BS04 PEB ? GO:0009507 ... E2IH77 N/A
    5185 7ezx:AO (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5186 7ezx:AO (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5187 7ezx:AO (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5188 7ezx:AQ (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5189 7ezx:AQ (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5190 7ezx:AQ (3.0) BS03 PEB ? GO:0009507 ... E2IH77 N/A
    5191 7ezx:B3 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5192 7ezx:B3 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5193 7ezx:B3 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5194 7ezx:B4 (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    5195 7ezx:B4 (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    5196 7ezx:B5 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5197 7ezx:B5 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    5198 7ezx:B5 (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    5199 7ezx:B8 (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    5200 7ezx:B8 (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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