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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 6kgx:Z8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4202 6kgx:Z8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4203 6kgx:Z8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4204 6kgx:Z8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4205 6kgx:ZA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4206 6kgx:ZA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4207 6kgx:ZA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4208 6kgx:ZA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4209 6kgx:ZB (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4210 6kgx:ZB (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4211 6kgx:ZB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4212 6kgx:ZE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4213 6kgx:ZE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4214 6kgx:ZE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4215 6kgx:ZE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4216 6kgx:ZF (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4217 6kgx:ZF (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4218 6kgx:ZF (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4219 6kgx:ZF (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4220 6kgx:ZG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4221 6kgx:ZG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4222 6kgx:ZG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4223 6kgx:ZG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4224 6kgx:ZH (2.8) BS01 PEB N/A N/A N/A 32076272
    4225 6kgx:ZI (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4226 6kgx:ZI (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4227 6kgx:ZI (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4228 6kgx:ZI (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4229 6kgx:a1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4230 6kgx:a1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4231 6kgx:a1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4232 6kgx:a2 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4233 6kgx:a2 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4234 6kgx:a2 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4235 6kgx:a2 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4236 6kgx:a4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4237 6kgx:a4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4238 6kgx:a4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4239 6kgx:a6 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4240 6kgx:a6 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4241 6kgx:a6 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4242 6kgx:a6 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4243 6kgx:a7 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4244 6kgx:a7 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4245 6kgx:a7 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4246 6kgx:a7 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4247 6kgx:a8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4248 6kgx:a8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4249 6kgx:a8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4250 6kgx:a8 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4251 6kgx:a8 (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    4252 6kgx:aA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4253 6kgx:aA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4254 6kgx:aA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4255 6kgx:aA (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4256 6kgx:aA (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    4257 6kgx:aB (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4258 6kgx:aB (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4259 6kgx:aB (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4260 6kgx:aB (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4261 6kgx:aE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4262 6kgx:aE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4263 6kgx:aE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4264 6kgx:aF (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4265 6kgx:aF (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4266 6kgx:aF (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4267 6kgx:aF (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4268 6kgx:aG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4269 6kgx:aG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4270 6kgx:aG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4271 6kgx:aG (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4272 6kgx:aH (2.8) BS01 PEB N/A N/A N/A 32076272
    4273 6kgx:aI (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4274 6kgx:aI (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4275 6kgx:aI (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4276 6kgx:aI (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4277 6kgx:b1 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    4278 6kgx:b1 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    4279 6kgx:b1 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    4280 6kgx:b1 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    4281 6kgx:b1 (2.8) BS05 PEB N/A GO:0015979 ... N/A 32076272
    4282 6kgx:b1 (2.8) BS06 PEB N/A GO:0015979 ... N/A 32076272
    4283 6kgx:b2 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4284 6kgx:b2 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4285 6kgx:b2 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4286 6kgx:b4 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    4287 6kgx:b4 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    4288 6kgx:b4 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    4289 6kgx:b4 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    4290 6kgx:b4 (2.8) BS05 PEB N/A GO:0015979 ... N/A 32076272
    4291 6kgx:b4 (2.8) BS06 PEB N/A GO:0015979 ... N/A 32076272
    4292 6kgx:b6 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4293 6kgx:b6 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4294 6kgx:b6 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4295 6kgx:b7 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4296 6kgx:b7 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4297 6kgx:b7 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4298 6kgx:b8 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    4299 6kgx:b8 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    4300 6kgx:b8 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    4301 6kgx:b8 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    4302 6kgx:bA (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    4303 6kgx:bA (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    4304 6kgx:bB (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4305 6kgx:bB (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4306 6kgx:bB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4307 6kgx:bE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4308 6kgx:bE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4309 6kgx:bE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4310 6kgx:bE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4311 6kgx:bF (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4312 6kgx:bF (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4313 6kgx:bF (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4314 6kgx:bG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4315 6kgx:bG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4316 6kgx:bG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4317 6kgx:bG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4318 6kgx:bH (2.8) BS01 PEB N/A N/A N/A 32076272
    4319 6kgx:bI (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4320 6kgx:bI (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4321 6kgx:bI (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4322 6kgx:c1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4323 6kgx:c1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4324 6kgx:c1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4325 6kgx:c2 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4326 6kgx:c2 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4327 6kgx:c2 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4328 6kgx:c2 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4329 6kgx:c4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4330 6kgx:c4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4331 6kgx:c4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4332 6kgx:c6 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4333 6kgx:c6 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4334 6kgx:c6 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4335 6kgx:c6 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4336 6kgx:c7 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4337 6kgx:c7 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4338 6kgx:c7 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4339 6kgx:c7 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4340 6kgx:c8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4341 6kgx:c8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4342 6kgx:c8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4343 6kgx:c8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4344 6kgx:cA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4345 6kgx:cA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4346 6kgx:cA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4347 6kgx:cA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4348 6kgx:cB (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4349 6kgx:cB (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4350 6kgx:cB (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4351 6kgx:cB (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4352 6kgx:cE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4353 6kgx:cE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4354 6kgx:cE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4355 6kgx:cF (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4356 6kgx:cF (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4357 6kgx:cF (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4358 6kgx:cF (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4359 6kgx:cG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4360 6kgx:cG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4361 6kgx:cG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4362 6kgx:cI (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4363 6kgx:cI (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4364 6kgx:cI (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4365 6kgx:cI (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4366 6kgx:d1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4367 6kgx:d1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4368 6kgx:d1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4369 6kgx:d1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4370 6kgx:d2 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4371 6kgx:d2 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4372 6kgx:d2 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4373 6kgx:d2 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    4374 6kgx:d4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4375 6kgx:d4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    4376 6kgx:d4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4377 6kgx:d4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    4378 6kgx:d6 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4379 6kgx:d6 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4380 6kgx:d6 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4381 6kgx:d7 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4382 6kgx:d7 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4383 6kgx:d7 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4384 6kgx:d8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4385 6kgx:d8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4386 6kgx:d8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4387 6kgx:d9 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    4388 6kgx:d9 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    4389 6kgx:d9 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    4390 6kgx:d9 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    4391 6kgx:d9 (2.8) BS05 PEB N/A GO:0015979 ... N/A 32076272
    4392 6kgx:d9 (2.8) BS06 PEB N/A GO:0015979 ... N/A 32076272
    4393 6kgx:dA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4394 6kgx:dA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4395 6kgx:dA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4396 6kgx:dB (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    4397 6kgx:dB (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    4398 6kgx:dB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    4399 6kgx:dE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    4400 6kgx:dE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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