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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5aqd:R (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    202 5aqd:R (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    203 5aqd:S (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    204 5aqd:S (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    205 5aqd:S (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    206 5aqd:S (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    207 5aqd:T (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    208 5aqd:T (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    209 5aqd:T (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    210 5aqd:T (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    211 5aqd:U (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    212 5aqd:U (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    213 5aqd:U (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    214 5aqd:U (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    215 5aqd:V (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    216 5aqd:V (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    217 5aqd:V (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    218 5aqd:V (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    219 5aqd:W (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    220 5aqd:W (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    221 5aqd:W (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    222 5aqd:W (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    223 5aqd:X (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    224 5aqd:X (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    225 5aqd:X (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    226 5aqd:X (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    227 5fvb:A (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    228 5fvb:A (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    229 5fvb:A (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    230 5fvb:A (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    231 5fvb:B (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    232 5fvb:B (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    233 5fvb:B (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    234 5fvb:B (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    235 5fvb:C (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    236 5fvb:C (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    237 5fvb:C (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    238 5fvb:C (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    239 5fvb:D (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    240 5fvb:D (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    241 5fvb:D (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    242 5fvb:D (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    243 5fvb:E (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    244 5fvb:E (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    245 5fvb:E (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    246 5fvb:E (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    247 5fvb:F (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    248 5fvb:F (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    249 5fvb:F (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    250 5fvb:F (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    251 5fvb:G (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    252 5fvb:G (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    253 5fvb:G (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    254 5fvb:G (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    255 5fvb:H (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    256 5fvb:H (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    257 5fvb:H (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    258 5fvb:H (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    259 5fvb:I (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    260 5fvb:I (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    261 5fvb:I (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    262 5fvb:I (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    263 5fvb:J (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    264 5fvb:J (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    265 5fvb:J (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    266 5fvb:J (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    267 5fvb:K (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    268 5fvb:K (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    269 5fvb:K (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    270 5fvb:K (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    271 5fvb:L (1.93) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    272 5fvb:L (1.93) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    273 5fvb:L (1.93) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    274 5fvb:L (1.93) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    275 5fvb:M (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    276 5fvb:M (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    277 5fvb:M (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    278 5fvb:M (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    279 5fvb:N (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    280 5fvb:N (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    281 5fvb:N (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    282 5fvb:N (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    283 5fvb:O (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    284 5fvb:O (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    285 5fvb:O (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    286 5fvb:O (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    287 5fvb:P (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    288 5fvb:P (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    289 5fvb:P (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    290 5fvb:P (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    291 5fvb:Q (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    292 5fvb:Q (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    293 5fvb:Q (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    294 5fvb:Q (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    295 5fvb:R (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    296 5fvb:R (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    297 5fvb:R (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    298 5fvb:R (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    299 5fvb:S (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    300 5fvb:S (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    301 5fvb:S (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    302 5fvb:S (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    303 5fvb:T (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    304 5fvb:T (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    305 5fvb:T (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    306 5fvb:T (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    307 5fvb:U (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    308 5fvb:U (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    309 5fvb:U (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    310 5fvb:U (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    311 5fvb:V (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    312 5fvb:V (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    313 5fvb:V (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    314 5fvb:V (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    315 5fvb:W (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    316 5fvb:W (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    317 5fvb:W (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    318 5fvb:W (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    319 5fvb:X (1.93) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    320 5fvb:X (1.93) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    321 5fvb:X (1.93) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    322 5fvb:X (1.93) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    323 5nb3:A (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    324 5nb3:A (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    325 5nb3:A (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    326 5nb3:A (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    327 5nb3:B (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    328 5nb3:B (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    329 5nb3:B (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    330 5nb3:B (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    331 5nb3:C (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    332 5nb3:C (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    333 5nb3:C (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    334 5nb3:C (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    335 5nb3:D (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    336 5nb3:D (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    337 5nb3:D (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    338 5nb3:D (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    339 5nb3:E (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    340 5nb3:E (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    341 5nb3:E (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    342 5nb3:E (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    343 5nb3:F (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    344 5nb3:F (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    345 5nb3:F (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    346 5nb3:F (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    347 5nb3:G (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    348 5nb3:G (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    349 5nb3:G (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    350 5nb3:G (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    351 5nb3:H (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    352 5nb3:H (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    353 5nb3:H (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    354 5nb3:H (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    355 5nb3:I (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    356 5nb3:I (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    357 5nb3:I (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    358 5nb3:I (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    359 5nb3:J (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    360 5nb3:J (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    361 5nb3:J (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    362 5nb3:J (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    363 5nb3:K (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    364 5nb3:K (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    365 5nb3:K (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    366 5nb3:K (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    367 5nb3:L (1.38) BS01 PEB ? GO:0009579 ... A0A0E3W010 28918447
    368 5nb3:L (1.38) BS02 PEB ? GO:0009579 ... A0A0E3W010 28918447
    369 5nb3:L (1.38) BS03 PEB ? GO:0009579 ... A0A0E3W010 28918447
    370 5nb3:L (1.38) BS04 PEB ? GO:0009579 ... A0A0E3W010 28918447
    371 5nb3:M (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    372 5nb3:M (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    373 5nb3:M (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    374 5nb3:M (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    375 5nb3:N (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    376 5nb3:N (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    377 5nb3:N (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    378 5nb3:N (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    379 5nb3:O (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    380 5nb3:O (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    381 5nb3:O (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    382 5nb3:O (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383 5nb3:P (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    384 5nb3:P (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    385 5nb3:P (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    386 5nb3:P (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    387 5nb3:Q (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    388 5nb3:Q (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    389 5nb3:Q (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    390 5nb3:Q (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    391 5nb3:R (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    392 5nb3:R (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    393 5nb3:R (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    394 5nb3:R (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    395 5nb3:S (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    396 5nb3:S (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    397 5nb3:S (1.38) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    398 5nb3:S (1.38) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    399 5nb3:T (1.38) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    400 5nb3:T (1.38) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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