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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 6kgx:KA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3402 6kgx:KA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3403 6kgx:KB (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3404 6kgx:KC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3405 6kgx:KC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3406 6kgx:KC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3407 6kgx:KD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3408 6kgx:KD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3409 6kgx:KD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3410 6kgx:KD (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    3411 6kgx:KE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3412 6kgx:KE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3413 6kgx:KG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3414 6kgx:KG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3415 6kgx:KJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3416 6kgx:KJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3417 6kgx:KJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3418 6kgx:KJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3419 6kgx:L1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3420 6kgx:L1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3421 6kgx:L1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3422 6kgx:L1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3423 6kgx:L2 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3424 6kgx:L3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3425 6kgx:L3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3426 6kgx:L3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3427 6kgx:L3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3428 6kgx:L4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3429 6kgx:L4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3430 6kgx:L4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3431 6kgx:L4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3432 6kgx:L5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3433 6kgx:L5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3434 6kgx:L5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3435 6kgx:L6 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3436 6kgx:L7 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3437 6kgx:L8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3438 6kgx:L8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3439 6kgx:L8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3440 6kgx:L8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3441 6kgx:L9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3442 6kgx:L9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3443 6kgx:L9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3444 6kgx:L9 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3445 6kgx:LA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3446 6kgx:LA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3447 6kgx:LA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3448 6kgx:LA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3449 6kgx:LB (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3450 6kgx:LC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3451 6kgx:LC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3452 6kgx:LC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3453 6kgx:LD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3454 6kgx:LD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3455 6kgx:LD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3456 6kgx:LD (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3457 6kgx:LE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3458 6kgx:LE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3459 6kgx:LE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3460 6kgx:LE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3461 6kgx:LF (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3462 6kgx:LG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3463 6kgx:LG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3464 6kgx:LG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3465 6kgx:LG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3466 6kgx:LI (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3467 6kgx:LJ (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3468 6kgx:LJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3469 6kgx:LJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3470 6kgx:LJ (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3471 6kgx:M1 (2.8) BS02 PEB N/A N/A N/A 32076272
    3472 6kgx:M1 (2.8) BS03 PEB N/A N/A N/A 32076272
    3473 6kgx:M1 (2.8) BS04 PEB N/A N/A N/A 32076272
    3474 6kgx:M1 (2.8) BS05 PEB N/A N/A N/A 32076272
    3475 6kgx:M1 (2.8) BS07 PEB N/A N/A N/A 32076272
    3476 6kgx:M1 (2.8) BS08 PEB N/A N/A N/A 32076272
    3477 6kgx:M1 (2.8) BS09 PEB N/A N/A N/A 32076272
    3478 6kgx:M1 (2.8) BS10 PEB N/A N/A N/A 32076272
    3479 6kgx:M2 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3480 6kgx:M3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3481 6kgx:M3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3482 6kgx:M3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3483 6kgx:M3 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3484 6kgx:M4 (2.8) BS02 PEB N/A N/A N/A 32076272
    3485 6kgx:M4 (2.8) BS03 PEB N/A N/A N/A 32076272
    3486 6kgx:M4 (2.8) BS04 PEB N/A N/A N/A 32076272
    3487 6kgx:M4 (2.8) BS05 PEB N/A N/A N/A 32076272
    3488 6kgx:M4 (2.8) BS06 PEB N/A N/A N/A 32076272
    3489 6kgx:M4 (2.8) BS08 PEB N/A N/A N/A 32076272
    3490 6kgx:M4 (2.8) BS09 PEB N/A N/A N/A 32076272
    3491 6kgx:M4 (2.8) BS10 PEB N/A N/A N/A 32076272
    3492 6kgx:M4 (2.8) BS11 PEB N/A N/A N/A 32076272
    3493 6kgx:M6 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3494 6kgx:M8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3495 6kgx:M8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3496 6kgx:M8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3497 6kgx:M9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3498 6kgx:M9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3499 6kgx:M9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3500 6kgx:M9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3501 6kgx:MA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3502 6kgx:MA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3503 6kgx:MA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3504 6kgx:MA (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3505 6kgx:MB (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3506 6kgx:MD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3507 6kgx:MD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3508 6kgx:MD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3509 6kgx:ME (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3510 6kgx:ME (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3511 6kgx:ME (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3512 6kgx:MF (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3513 6kgx:MG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3514 6kgx:MG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3515 6kgx:MG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3516 6kgx:MG (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3517 6kgx:MI (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3518 6kgx:MJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3519 6kgx:MJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3520 6kgx:MJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3521 6kgx:MJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3522 6kgx:N1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3523 6kgx:N1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3524 6kgx:N1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3525 6kgx:N2 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3526 6kgx:N3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3527 6kgx:N3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3528 6kgx:N3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3529 6kgx:N3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3530 6kgx:N4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3531 6kgx:N4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3532 6kgx:N4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3533 6kgx:N6 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3534 6kgx:N7 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3535 6kgx:N8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3536 6kgx:N8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3537 6kgx:N8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3538 6kgx:N8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3539 6kgx:N9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3540 6kgx:N9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3541 6kgx:N9 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3542 6kgx:NA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3543 6kgx:NA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3544 6kgx:NA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3545 6kgx:NA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3546 6kgx:NB (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3547 6kgx:ND (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3548 6kgx:ND (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3549 6kgx:ND (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3550 6kgx:ND (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3551 6kgx:NE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3552 6kgx:NE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3553 6kgx:NE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3554 6kgx:NE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3555 6kgx:NF (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3556 6kgx:NG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3557 6kgx:NG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3558 6kgx:NG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3559 6kgx:NG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3560 6kgx:NI (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3561 6kgx:NJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3562 6kgx:NJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3563 6kgx:NJ (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3564 6kgx:O1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3565 6kgx:O1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3566 6kgx:O1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3567 6kgx:O1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3568 6kgx:O2 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3569 6kgx:O2 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3570 6kgx:O2 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3571 6kgx:O2 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3572 6kgx:O3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3573 6kgx:O3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3574 6kgx:O3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3575 6kgx:O4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3576 6kgx:O4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3577 6kgx:O4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3578 6kgx:O6 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3579 6kgx:O6 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3580 6kgx:O6 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3581 6kgx:O7 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3582 6kgx:O7 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3583 6kgx:O7 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3584 6kgx:O7 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3585 6kgx:O8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3586 6kgx:O8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3587 6kgx:O8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3588 6kgx:O8 (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    3589 6kgx:O9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3590 6kgx:O9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3591 6kgx:O9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3592 6kgx:OA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3593 6kgx:OA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3594 6kgx:OA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3595 6kgx:OA (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    3596 6kgx:OB (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3597 6kgx:OB (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3598 6kgx:OB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3599 6kgx:OD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3600 6kgx:OD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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