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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 6kgx:BJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3002 6kgx:BJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3003 6kgx:C1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3004 6kgx:C1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3005 6kgx:C1 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3006 6kgx:C1 (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    3007 6kgx:C3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3008 6kgx:C3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3009 6kgx:C3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3010 6kgx:C4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3011 6kgx:C4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3012 6kgx:C5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3013 6kgx:C5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3014 6kgx:C5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3015 6kgx:C5 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3016 6kgx:C6 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3017 6kgx:C8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3018 6kgx:C8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3019 6kgx:C8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3020 6kgx:C8 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3021 6kgx:C9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3022 6kgx:C9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3023 6kgx:C9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3024 6kgx:C9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3025 6kgx:CA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3026 6kgx:CA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3027 6kgx:CA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3028 6kgx:CA (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3029 6kgx:CB (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3030 6kgx:CC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3031 6kgx:CC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3032 6kgx:CC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3033 6kgx:CD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3034 6kgx:CD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3035 6kgx:CD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3036 6kgx:CE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3037 6kgx:CE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3038 6kgx:CE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3039 6kgx:CG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3040 6kgx:CG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3041 6kgx:CG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3042 6kgx:CJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3043 6kgx:CJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3044 6kgx:CJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3045 6kgx:CJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3046 6kgx:D1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3047 6kgx:D1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3048 6kgx:D1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3049 6kgx:D1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3050 6kgx:D2 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3051 6kgx:D3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3052 6kgx:D3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3053 6kgx:D3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3054 6kgx:D3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3055 6kgx:D4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3056 6kgx:D4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3057 6kgx:D4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3058 6kgx:D4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3059 6kgx:D6 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3060 6kgx:D7 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3061 6kgx:D8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3062 6kgx:D8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3063 6kgx:D8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3064 6kgx:D8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3065 6kgx:D9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3066 6kgx:D9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3067 6kgx:D9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3068 6kgx:D9 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3069 6kgx:DA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3070 6kgx:DA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3071 6kgx:DA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3072 6kgx:DB (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3073 6kgx:DD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3074 6kgx:DD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3075 6kgx:DD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3076 6kgx:DD (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3077 6kgx:DE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3078 6kgx:DE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3079 6kgx:DE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3080 6kgx:DE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3081 6kgx:DF (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3082 6kgx:DG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3083 6kgx:DG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3084 6kgx:DG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3085 6kgx:DI (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3086 6kgx:DJ (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3087 6kgx:DJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3088 6kgx:DJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3089 6kgx:E1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3090 6kgx:E1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3091 6kgx:E1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3092 6kgx:E2 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3093 6kgx:E3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3094 6kgx:E3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3095 6kgx:E3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3096 6kgx:E3 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3097 6kgx:E4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3098 6kgx:E4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3099 6kgx:E4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3100 6kgx:E4 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3101 6kgx:E4 (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    3102 6kgx:E6 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3103 6kgx:E7 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3104 6kgx:E8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3105 6kgx:E8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3106 6kgx:E8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3107 6kgx:E8 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3108 6kgx:E9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3109 6kgx:E9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3110 6kgx:E9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3111 6kgx:E9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3112 6kgx:EA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3113 6kgx:EA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3114 6kgx:EA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3115 6kgx:EA (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3116 6kgx:EB (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3117 6kgx:ED (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3118 6kgx:ED (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3119 6kgx:ED (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3120 6kgx:EE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3121 6kgx:EE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3122 6kgx:EE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3123 6kgx:EF (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3124 6kgx:EG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3125 6kgx:EG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3126 6kgx:EI (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3127 6kgx:EJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3128 6kgx:EJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3129 6kgx:EJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3130 6kgx:EJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3131 6kgx:F1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3132 6kgx:F1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3133 6kgx:F1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3134 6kgx:F1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3135 6kgx:F2 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3136 6kgx:F3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3137 6kgx:F3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3138 6kgx:F3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3139 6kgx:F3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3140 6kgx:F4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3141 6kgx:F4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3142 6kgx:F4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3143 6kgx:F5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3144 6kgx:F5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3145 6kgx:F5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3146 6kgx:F6 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3147 6kgx:F7 (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3148 6kgx:F8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3149 6kgx:F8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3150 6kgx:F8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3151 6kgx:F8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3152 6kgx:F9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3153 6kgx:F9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3154 6kgx:F9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3155 6kgx:FA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3156 6kgx:FA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3157 6kgx:FA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3158 6kgx:FA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3159 6kgx:FB (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3160 6kgx:FC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3161 6kgx:FC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3162 6kgx:FC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3163 6kgx:FD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3164 6kgx:FD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3165 6kgx:FD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3166 6kgx:FD (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3167 6kgx:FE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3168 6kgx:FE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3169 6kgx:FE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3170 6kgx:FE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3171 6kgx:FF (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3172 6kgx:FG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3173 6kgx:FG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3174 6kgx:FG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3175 6kgx:FG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3176 6kgx:FI (2.8) BS01 PEB ? GO:0009507 ... W0RZB2 32076272
    3177 6kgx:FJ (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3178 6kgx:FJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3179 6kgx:FJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3180 6kgx:G1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3181 6kgx:G1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3182 6kgx:G1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3183 6kgx:G1 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3184 6kgx:G2 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3185 6kgx:G2 (2.8) BS02 PEB ? GO:0009507 ... W0RYI4 32076272
    3186 6kgx:G3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3187 6kgx:G3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3188 6kgx:G3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3189 6kgx:G3 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3190 6kgx:G4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3191 6kgx:G4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    3192 6kgx:G4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    3193 6kgx:G4 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    3194 6kgx:G5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    3195 6kgx:G5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3196 6kgx:G5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    3197 6kgx:G6 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3198 6kgx:G7 (2.8) BS01 PEB ? GO:0009507 ... W0RYI4 32076272
    3199 6kgx:G8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    3200 6kgx:G8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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