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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 5y6p:z9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2802 5y6p:z9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2803 6kgx:11 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2804 6kgx:11 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2805 6kgx:11 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2806 6kgx:11 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2807 6kgx:14 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2808 6kgx:14 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2809 6kgx:14 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2810 6kgx:14 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2811 6kgx:21 (2.8) BS01 PEB N/A N/A N/A 32076272
    2812 6kgx:21 (2.8) BS02 PEB N/A N/A N/A 32076272
    2813 6kgx:21 (2.8) BS03 PEB N/A N/A N/A 32076272
    2814 6kgx:21 (2.8) BS04 PEB N/A N/A N/A 32076272
    2815 6kgx:21 (2.8) BS05 PEB N/A N/A N/A 32076272
    2816 6kgx:21 (2.8) BS06 PEB N/A N/A N/A 32076272
    2817 6kgx:21 (2.8) BS09 PEB N/A N/A N/A 32076272
    2818 6kgx:21 (2.8) BS10 PEB N/A N/A N/A 32076272
    2819 6kgx:21 (2.8) BS11 PEB N/A N/A N/A 32076272
    2820 6kgx:24 (2.8) BS01 PEB N/A N/A N/A 32076272
    2821 6kgx:24 (2.8) BS02 PEB N/A N/A N/A 32076272
    2822 6kgx:24 (2.8) BS03 PEB N/A N/A N/A 32076272
    2823 6kgx:24 (2.8) BS04 PEB N/A N/A N/A 32076272
    2824 6kgx:24 (2.8) BS05 PEB N/A N/A N/A 32076272
    2825 6kgx:24 (2.8) BS08 PEB N/A N/A N/A 32076272
    2826 6kgx:24 (2.8) BS09 PEB N/A N/A N/A 32076272
    2827 6kgx:24 (2.8) BS10 PEB N/A N/A N/A 32076272
    2828 6kgx:2H (2.8) BS01 PEB N/A N/A N/A 32076272
    2829 6kgx:31 (2.8) BS01 PEB N/A N/A N/A 32076272
    2830 6kgx:31 (2.8) BS02 PEB N/A N/A N/A 32076272
    2831 6kgx:34 (2.8) BS01 PEB N/A N/A N/A 32076272
    2832 6kgx:34 (2.8) BS02 PEB N/A N/A N/A 32076272
    2833 6kgx:34 (2.8) BS03 PEB N/A N/A N/A 32076272
    2834 6kgx:4H (2.8) BS01 PEB N/A N/A N/A 32076272
    2835 6kgx:A1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2836 6kgx:A1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2837 6kgx:A1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2838 6kgx:A2 (2.8) BS01 PEB N/A N/A N/A 32076272
    2839 6kgx:A2 (2.8) BS04 PEB N/A N/A N/A 32076272
    2840 6kgx:A2 (2.8) BS05 PEB N/A N/A N/A 32076272
    2841 6kgx:A2 (2.8) BS06 PEB N/A N/A N/A 32076272
    2842 6kgx:A2 (2.8) BS07 PEB N/A N/A N/A 32076272
    2843 6kgx:A2 (2.8) BS08 PEB N/A N/A N/A 32076272
    2844 6kgx:A2 (2.8) BS09 PEB N/A N/A N/A 32076272
    2845 6kgx:A2 (2.8) BS10 PEB N/A N/A N/A 32076272
    2846 6kgx:A2 (2.8) BS11 PEB N/A N/A N/A 32076272
    2847 6kgx:A2 (2.8) BS12 PEB N/A N/A N/A 32076272
    2848 6kgx:A2 (2.8) BS13 PEB N/A N/A N/A 32076272
    2849 6kgx:A3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2850 6kgx:A3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2851 6kgx:A3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2852 6kgx:A3 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    2853 6kgx:A4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2854 6kgx:A4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2855 6kgx:A5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2856 6kgx:A5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2857 6kgx:A5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2858 6kgx:A5 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2859 6kgx:A6 (2.8) BS01 PEB N/A N/A N/A 32076272
    2860 6kgx:A6 (2.8) BS04 PEB N/A N/A N/A 32076272
    2861 6kgx:A6 (2.8) BS05 PEB N/A N/A N/A 32076272
    2862 6kgx:A6 (2.8) BS06 PEB N/A N/A N/A 32076272
    2863 6kgx:A6 (2.8) BS07 PEB N/A N/A N/A 32076272
    2864 6kgx:A6 (2.8) BS08 PEB N/A N/A N/A 32076272
    2865 6kgx:A6 (2.8) BS09 PEB N/A N/A N/A 32076272
    2866 6kgx:A6 (2.8) BS10 PEB N/A N/A N/A 32076272
    2867 6kgx:A6 (2.8) BS11 PEB N/A N/A N/A 32076272
    2868 6kgx:A6 (2.8) BS12 PEB N/A N/A N/A 32076272
    2869 6kgx:A6 (2.8) BS13 PEB N/A N/A N/A 32076272
    2870 6kgx:A7 (2.8) BS01 PEB N/A N/A N/A 32076272
    2871 6kgx:A7 (2.8) BS02 PEB N/A N/A N/A 32076272
    2872 6kgx:A7 (2.8) BS05 PEB N/A N/A N/A 32076272
    2873 6kgx:A7 (2.8) BS06 PEB N/A N/A N/A 32076272
    2874 6kgx:A7 (2.8) BS07 PEB N/A N/A N/A 32076272
    2875 6kgx:A7 (2.8) BS08 PEB N/A N/A N/A 32076272
    2876 6kgx:A7 (2.8) BS09 PEB N/A N/A N/A 32076272
    2877 6kgx:A7 (2.8) BS10 PEB N/A N/A N/A 32076272
    2878 6kgx:A7 (2.8) BS11 PEB N/A N/A N/A 32076272
    2879 6kgx:A8 (2.8) BS01 PEB N/A N/A N/A 32076272
    2880 6kgx:A8 (2.8) BS02 PEB N/A N/A N/A 32076272
    2881 6kgx:A8 (2.8) BS05 PEB N/A N/A N/A 32076272
    2882 6kgx:A8 (2.8) BS06 PEB N/A N/A N/A 32076272
    2883 6kgx:A8 (2.8) BS07 PEB N/A N/A N/A 32076272
    2884 6kgx:A8 (2.8) BS08 PEB N/A N/A N/A 32076272
    2885 6kgx:A8 (2.8) BS09 PEB N/A N/A N/A 32076272
    2886 6kgx:A8 (2.8) BS10 PEB N/A N/A N/A 32076272
    2887 6kgx:A9 (2.8) BS01 PEB N/A N/A N/A 32076272
    2888 6kgx:A9 (2.8) BS03 PEB N/A N/A N/A 32076272
    2889 6kgx:A9 (2.8) BS04 PEB N/A N/A N/A 32076272
    2890 6kgx:A9 (2.8) BS06 PEB N/A N/A N/A 32076272
    2891 6kgx:A9 (2.8) BS07 PEB N/A N/A N/A 32076272
    2892 6kgx:A9 (2.8) BS08 PEB N/A N/A N/A 32076272
    2893 6kgx:A9 (2.8) BS09 PEB N/A N/A N/A 32076272
    2894 6kgx:A9 (2.8) BS10 PEB N/A N/A N/A 32076272
    2895 6kgx:A9 (2.8) BS11 PEB N/A N/A N/A 32076272
    2896 6kgx:AA (2.8) BS01 PEB N/A N/A N/A 32076272
    2897 6kgx:AA (2.8) BS02 PEB N/A N/A N/A 32076272
    2898 6kgx:AA (2.8) BS05 PEB N/A N/A N/A 32076272
    2899 6kgx:AA (2.8) BS06 PEB N/A N/A N/A 32076272
    2900 6kgx:AA (2.8) BS07 PEB N/A N/A N/A 32076272
    2901 6kgx:AA (2.8) BS08 PEB N/A N/A N/A 32076272
    2902 6kgx:AA (2.8) BS09 PEB N/A N/A N/A 32076272
    2903 6kgx:AA (2.8) BS10 PEB N/A N/A N/A 32076272
    2904 6kgx:AB (2.8) BS01 PEB N/A N/A N/A 32076272
    2905 6kgx:AB (2.8) BS04 PEB N/A N/A N/A 32076272
    2906 6kgx:AB (2.8) BS05 PEB N/A N/A N/A 32076272
    2907 6kgx:AB (2.8) BS06 PEB N/A N/A N/A 32076272
    2908 6kgx:AB (2.8) BS07 PEB N/A N/A N/A 32076272
    2909 6kgx:AB (2.8) BS08 PEB N/A N/A N/A 32076272
    2910 6kgx:AB (2.8) BS09 PEB N/A N/A N/A 32076272
    2911 6kgx:AB (2.8) BS10 PEB N/A N/A N/A 32076272
    2912 6kgx:AB (2.8) BS11 PEB N/A N/A N/A 32076272
    2913 6kgx:AB (2.8) BS12 PEB N/A N/A N/A 32076272
    2914 6kgx:AB (2.8) BS13 PEB N/A N/A N/A 32076272
    2915 6kgx:AC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2916 6kgx:AC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2917 6kgx:AC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2918 6kgx:AC (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2919 6kgx:AD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2920 6kgx:AD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2921 6kgx:AE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2922 6kgx:AE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2923 6kgx:AE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2924 6kgx:AF (2.8) BS01 PEB N/A N/A N/A 32076272
    2925 6kgx:AF (2.8) BS02 PEB N/A N/A N/A 32076272
    2926 6kgx:AF (2.8) BS05 PEB N/A N/A N/A 32076272
    2927 6kgx:AF (2.8) BS06 PEB N/A N/A N/A 32076272
    2928 6kgx:AF (2.8) BS07 PEB N/A N/A N/A 32076272
    2929 6kgx:AF (2.8) BS08 PEB N/A N/A N/A 32076272
    2930 6kgx:AF (2.8) BS09 PEB N/A N/A N/A 32076272
    2931 6kgx:AF (2.8) BS10 PEB N/A N/A N/A 32076272
    2932 6kgx:AF (2.8) BS11 PEB N/A N/A N/A 32076272
    2933 6kgx:AF (2.8) BS12 PEB N/A N/A N/A 32076272
    2934 6kgx:AG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2935 6kgx:AG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2936 6kgx:AI (2.8) BS01 PEB N/A N/A N/A 32076272
    2937 6kgx:AI (2.8) BS04 PEB N/A N/A N/A 32076272
    2938 6kgx:AI (2.8) BS05 PEB N/A N/A N/A 32076272
    2939 6kgx:AI (2.8) BS06 PEB N/A N/A N/A 32076272
    2940 6kgx:AI (2.8) BS07 PEB N/A N/A N/A 32076272
    2941 6kgx:AI (2.8) BS08 PEB N/A N/A N/A 32076272
    2942 6kgx:AI (2.8) BS09 PEB N/A N/A N/A 32076272
    2943 6kgx:AI (2.8) BS10 PEB N/A N/A N/A 32076272
    2944 6kgx:AI (2.8) BS11 PEB N/A N/A N/A 32076272
    2945 6kgx:AI (2.8) BS12 PEB N/A N/A N/A 32076272
    2946 6kgx:AJ (2.8) BS01 PEB N/A N/A N/A 32076272
    2947 6kgx:AJ (2.8) BS03 PEB N/A N/A N/A 32076272
    2948 6kgx:AJ (2.8) BS04 PEB N/A N/A N/A 32076272
    2949 6kgx:AJ (2.8) BS05 PEB N/A N/A N/A 32076272
    2950 6kgx:AJ (2.8) BS07 PEB N/A N/A N/A 32076272
    2951 6kgx:AJ (2.8) BS08 PEB N/A N/A N/A 32076272
    2952 6kgx:AJ (2.8) BS09 PEB N/A N/A N/A 32076272
    2953 6kgx:AJ (2.8) BS10 PEB N/A N/A N/A 32076272
    2954 6kgx:AJ (2.8) BS11 PEB N/A N/A N/A 32076272
    2955 6kgx:B1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2956 6kgx:B1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2957 6kgx:B1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2958 6kgx:B1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2959 6kgx:B3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2960 6kgx:B3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2961 6kgx:B3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2962 6kgx:B3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2963 6kgx:B4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2964 6kgx:B4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2965 6kgx:B4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2966 6kgx:B4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2967 6kgx:B5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2968 6kgx:B5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2969 6kgx:B5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2970 6kgx:B8 (2.8) BS01 PEB N/A N/A N/A 32076272
    2971 6kgx:B8 (2.8) BS03 PEB N/A N/A N/A 32076272
    2972 6kgx:B8 (2.8) BS04 PEB N/A N/A N/A 32076272
    2973 6kgx:B8 (2.8) BS05 PEB N/A N/A N/A 32076272
    2974 6kgx:B8 (2.8) BS07 PEB N/A N/A N/A 32076272
    2975 6kgx:B8 (2.8) BS08 PEB N/A N/A N/A 32076272
    2976 6kgx:B9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    2977 6kgx:B9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    2978 6kgx:B9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    2979 6kgx:BA (2.8) BS01 PEB N/A N/A N/A 32076272
    2980 6kgx:BA (2.8) BS03 PEB N/A N/A N/A 32076272
    2981 6kgx:BA (2.8) BS04 PEB N/A N/A N/A 32076272
    2982 6kgx:BA (2.8) BS05 PEB N/A N/A N/A 32076272
    2983 6kgx:BA (2.8) BS07 PEB N/A N/A N/A 32076272
    2984 6kgx:BA (2.8) BS08 PEB N/A N/A N/A 32076272
    2985 6kgx:BC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2986 6kgx:BC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2987 6kgx:BC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2988 6kgx:BD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2989 6kgx:BD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2990 6kgx:BD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2991 6kgx:BD (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2992 6kgx:BE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2993 6kgx:BE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2994 6kgx:BE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2995 6kgx:BE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    2996 6kgx:BG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2997 6kgx:BG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    2998 6kgx:BG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    2999 6kgx:BG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    3000 6kgx:BJ (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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