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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 5y6p:kW (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2402 5y6p:kW (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2403 5y6p:kX (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2404 5y6p:kX (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2405 5y6p:ka (3.5) BS01 PEB N/A N/A N/A 29045394
    2406 5y6p:ka (3.5) BS02 PEB N/A N/A N/A 29045394
    2407 5y6p:ka (3.5) BS03 PEB N/A N/A N/A 29045394
    2408 5y6p:kb (3.5) BS01 PEB N/A N/A N/A 29045394
    2409 5y6p:kb (3.5) BS02 PEB N/A N/A N/A 29045394
    2410 5y6p:kb (3.5) BS03 PEB N/A N/A N/A 29045394
    2411 5y6p:l2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2412 5y6p:l2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2413 5y6p:l2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2414 5y6p:l3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2415 5y6p:l3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2416 5y6p:l3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2417 5y6p:l4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2418 5y6p:l4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2419 5y6p:l4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2420 5y6p:l4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2421 5y6p:l5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2422 5y6p:l5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2423 5y6p:l5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2424 5y6p:l6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2425 5y6p:l6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2426 5y6p:l6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2427 5y6p:l7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2428 5y6p:l7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2429 5y6p:l7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2430 5y6p:l8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2431 5y6p:l8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2432 5y6p:l9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2433 5y6p:l9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2434 5y6p:l9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2435 5y6p:la (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2436 5y6p:la (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2437 5y6p:lb (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2438 5y6p:lb (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2439 5y6p:lb (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2440 5y6p:lb (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    2441 5y6p:lc (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2442 5y6p:lc (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2443 5y6p:ld (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2444 5y6p:ld (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2445 5y6p:le (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2446 5y6p:le (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2447 5y6p:le (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2448 5y6p:lf (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2449 5y6p:lf (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2450 5y6p:lg (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2451 5y6p:lg (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2452 5y6p:lg (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2453 5y6p:lh (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2454 5y6p:lh (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2455 5y6p:lh (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2456 5y6p:li (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2457 5y6p:li (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2458 5y6p:li (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2459 5y6p:lj (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2460 5y6p:lj (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2461 5y6p:lj (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2462 5y6p:lk (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2463 5y6p:lk (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2464 5y6p:ll (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2465 5y6p:ll (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2466 5y6p:lm (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2467 5y6p:lm (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2468 5y6p:lm (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2469 5y6p:ln (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2470 5y6p:ln (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2471 5y6p:lo (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2472 5y6p:lo (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2473 5y6p:lo (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2474 5y6p:lp (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2475 5y6p:lp (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2476 5y6p:lq (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2477 5y6p:lq (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2478 5y6p:lr (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2479 5y6p:lr (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2480 5y6p:lr (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2481 5y6p:ls (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2482 5y6p:ls (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2483 5y6p:ls (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2484 5y6p:lt (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2485 5y6p:lt (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2486 5y6p:lt (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2487 5y6p:lu (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2488 5y6p:lu (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2489 5y6p:lv (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2490 5y6p:lv (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2491 5y6p:lv (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2492 5y6p:lw (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2493 5y6p:lw (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2494 5y6p:lx (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2495 5y6p:lx (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2496 5y6p:lx (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2497 5y6p:ly (3.5) BS01 PEB N/A N/A N/A 29045394
    2498 5y6p:ly (3.5) BS02 PEB N/A N/A N/A 29045394
    2499 5y6p:ly (3.5) BS03 PEB N/A N/A N/A 29045394
    2500 5y6p:ly (3.5) BS04 PEB N/A N/A N/A 29045394
    2501 5y6p:ly (3.5) BS05 PEB N/A N/A N/A 29045394
    2502 5y6p:ly (3.5) BS06 PEB N/A N/A N/A 29045394
    2503 5y6p:lz (3.5) BS01 PEB N/A N/A N/A 29045394
    2504 5y6p:lz (3.5) BS02 PEB N/A N/A N/A 29045394
    2505 5y6p:lz (3.5) BS03 PEB N/A N/A N/A 29045394
    2506 5y6p:lz (3.5) BS04 PEB N/A N/A N/A 29045394
    2507 5y6p:lz (3.5) BS05 PEB N/A N/A N/A 29045394
    2508 5y6p:m2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2509 5y6p:m2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2510 5y6p:m2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2511 5y6p:m3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2512 5y6p:m3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2513 5y6p:m4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2514 5y6p:m4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2515 5y6p:m4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2516 5y6p:m5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2517 5y6p:m5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2518 5y6p:m5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2519 5y6p:m6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2520 5y6p:m6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2521 5y6p:m6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2522 5y6p:m7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2523 5y6p:m7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2524 5y6p:m8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2525 5y6p:m8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2526 5y6p:m8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2527 5y6p:m9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2528 5y6p:m9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2529 5y6p:n2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2530 5y6p:n2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2531 5y6p:n2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2532 5y6p:n3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2533 5y6p:n3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2534 5y6p:n4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2535 5y6p:n4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2536 5y6p:n5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2537 5y6p:n5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2538 5y6p:n6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2539 5y6p:n6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2540 5y6p:n6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2541 5y6p:n7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2542 5y6p:n7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2543 5y6p:n8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2544 5y6p:n8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2545 5y6p:n9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2546 5y6p:n9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2547 5y6p:n9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2548 5y6p:o2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2549 5y6p:o2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2550 5y6p:o2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2551 5y6p:o2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2552 5y6p:o3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2553 5y6p:o3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2554 5y6p:o3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2555 5y6p:o4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2556 5y6p:o4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2557 5y6p:o4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2558 5y6p:o5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2559 5y6p:o5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2560 5y6p:o5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2561 5y6p:o6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2562 5y6p:o6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2563 5y6p:o6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2564 5y6p:o7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2565 5y6p:o7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2566 5y6p:o8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2567 5y6p:o8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2568 5y6p:o9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2569 5y6p:o9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2570 5y6p:o9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2571 5y6p:p2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2572 5y6p:p2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2573 5y6p:p3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2574 5y6p:p3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2575 5y6p:p3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2576 5y6p:p4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2577 5y6p:p4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2578 5y6p:p5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2579 5y6p:p5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2580 5y6p:p6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2581 5y6p:p6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2582 5y6p:p7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2583 5y6p:p7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2584 5y6p:p7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2585 5y6p:p8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2586 5y6p:p8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2587 5y6p:p8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2588 5y6p:p9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2589 5y6p:p9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2590 5y6p:p9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2591 5y6p:q2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2592 5y6p:q2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2593 5y6p:q3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2594 5y6p:q3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2595 5y6p:q3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2596 5y6p:q4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2597 5y6p:q4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2598 5y6p:q4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2599 5y6p:q5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2600 5y6p:q5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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