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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 5y6p:ey (3.5) BS05 PEB N/A N/A N/A 29045394
    2002 5y6p:ey (3.5) BS06 PEB N/A N/A N/A 29045394
    2003 5y6p:ey (3.5) BS07 PEB N/A N/A N/A 29045394
    2004 5y6p:ey (3.5) BS08 PEB N/A N/A N/A 29045394
    2005 5y6p:ez (3.5) BS01 PEB N/A N/A N/A 29045394
    2006 5y6p:ez (3.5) BS02 PEB N/A N/A N/A 29045394
    2007 5y6p:ez (3.5) BS03 PEB N/A N/A N/A 29045394
    2008 5y6p:ez (3.5) BS04 PEB N/A N/A N/A 29045394
    2009 5y6p:ez (3.5) BS05 PEB N/A N/A N/A 29045394
    2010 5y6p:ez (3.5) BS06 PEB N/A N/A N/A 29045394
    2011 5y6p:ez (3.5) BS07 PEB N/A N/A N/A 29045394
    2012 5y6p:ez (3.5) BS08 PEB N/A N/A N/A 29045394
    2013 5y6p:f2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2014 5y6p:f2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2015 5y6p:f2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2016 5y6p:f3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2017 5y6p:f3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2018 5y6p:f3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2019 5y6p:f4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2020 5y6p:f5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2021 5y6p:f5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2022 5y6p:f6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2023 5y6p:f6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2024 5y6p:f6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2025 5y6p:f7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2026 5y6p:f7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2027 5y6p:f8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2028 5y6p:f8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2029 5y6p:f8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2030 5y6p:f9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2031 5y6p:f9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2032 5y6p:fa (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2033 5y6p:fa (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2034 5y6p:fa (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2035 5y6p:fb (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2036 5y6p:fb (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2037 5y6p:fb (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2038 5y6p:fc (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2039 5y6p:fc (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2040 5y6p:fc (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2041 5y6p:fd (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2042 5y6p:fd (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2043 5y6p:fd (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2044 5y6p:fd (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2045 5y6p:fe (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2046 5y6p:fe (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2047 5y6p:fe (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2048 5y6p:ff (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2049 5y6p:ff (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2050 5y6p:ff (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2051 5y6p:fg (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2052 5y6p:fg (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2053 5y6p:fg (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2054 5y6p:fh (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2055 5y6p:fh (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2056 5y6p:fi (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2057 5y6p:fi (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2058 5y6p:fj (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2059 5y6p:fj (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2060 5y6p:fj (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2061 5y6p:fk (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2062 5y6p:fk (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2063 5y6p:fl (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2064 5y6p:fl (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2065 5y6p:fl (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2066 5y6p:fm (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2067 5y6p:fm (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2068 5y6p:fm (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2069 5y6p:fn (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2070 5y6p:fn (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2071 5y6p:fn (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2072 5y6p:fo (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2073 5y6p:fo (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2074 5y6p:fo (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2075 5y6p:fp (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2076 5y6p:fp (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2077 5y6p:fp (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2078 5y6p:fq (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2079 5y6p:fq (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2080 5y6p:fq (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2081 5y6p:fr (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2082 5y6p:fr (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2083 5y6p:fs (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2084 5y6p:fs (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2085 5y6p:fs (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2086 5y6p:ft (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2087 5y6p:ft (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2088 5y6p:fu (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2089 5y6p:fu (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2090 5y6p:fu (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2091 5y6p:fv (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2092 5y6p:fv (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2093 5y6p:fw (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2094 5y6p:fw (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2095 5y6p:fw (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2096 5y6p:fx (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2097 5y6p:fx (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2098 5y6p:fx (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2099 5y6p:fy (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2100 5y6p:fy (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2101 5y6p:fy (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2102 5y6p:fz (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2103 5y6p:fz (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2104 5y6p:fz (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2105 5y6p:g2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2106 5y6p:g2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2107 5y6p:g2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2108 5y6p:g3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2109 5y6p:g3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2110 5y6p:g3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2111 5y6p:g4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2112 5y6p:g4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2113 5y6p:g4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2114 5y6p:g5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2115 5y6p:g5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2116 5y6p:g5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2117 5y6p:g6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2118 5y6p:g6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2119 5y6p:g6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2120 5y6p:g7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2121 5y6p:g7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2122 5y6p:g8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2123 5y6p:g8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2124 5y6p:g9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2125 5y6p:ga (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2126 5y6p:ga (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2127 5y6p:gb (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2128 5y6p:gb (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2129 5y6p:gc (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2130 5y6p:gc (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2131 5y6p:gd (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2132 5y6p:gd (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2133 5y6p:ge (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2134 5y6p:ge (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2135 5y6p:gf (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2136 5y6p:gf (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2137 5y6p:gg (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2138 5y6p:gg (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2139 5y6p:gg (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2140 5y6p:gh (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2141 5y6p:gh (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2142 5y6p:gh (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2143 5y6p:gh (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2144 5y6p:gi (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2145 5y6p:gi (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2146 5y6p:gi (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2147 5y6p:gj (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2148 5y6p:gj (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2149 5y6p:gk (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2150 5y6p:gk (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2151 5y6p:gl (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2152 5y6p:gl (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2153 5y6p:gl (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2154 5y6p:gm (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2155 5y6p:gm (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2156 5y6p:gn (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2157 5y6p:gn (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2158 5y6p:gn (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2159 5y6p:go (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2160 5y6p:go (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2161 5y6p:go (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2162 5y6p:go (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2163 5y6p:gp (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2164 5y6p:gp (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2165 5y6p:gp (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2166 5y6p:gq (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2167 5y6p:gq (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2168 5y6p:gr (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2169 5y6p:gr (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2170 5y6p:gs (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2171 5y6p:gs (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2172 5y6p:gs (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2173 5y6p:gt (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2174 5y6p:gt (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2175 5y6p:gt (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2176 5y6p:gu (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2177 5y6p:gu (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2178 5y6p:gv (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2179 5y6p:gv (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2180 5y6p:gw (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2181 5y6p:gw (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2182 5y6p:gw (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2183 5y6p:gx (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2184 5y6p:gx (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2185 5y6p:gx (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2186 5y6p:gy (3.5) BS01 PEB N/A N/A N/A 29045394
    2187 5y6p:gy (3.5) BS02 PEB N/A N/A N/A 29045394
    2188 5y6p:gy (3.5) BS03 PEB N/A N/A N/A 29045394
    2189 5y6p:gy (3.5) BS04 PEB N/A N/A N/A 29045394
    2190 5y6p:gy (3.5) BS05 PEB N/A N/A N/A 29045394
    2191 5y6p:gy (3.5) BS06 PEB N/A N/A N/A 29045394
    2192 5y6p:gy (3.5) BS07 PEB N/A N/A N/A 29045394
    2193 5y6p:gy (3.5) BS08 PEB N/A N/A N/A 29045394
    2194 5y6p:gz (3.5) BS01 PEB N/A N/A N/A 29045394
    2195 5y6p:gz (3.5) BS02 PEB N/A N/A N/A 29045394
    2196 5y6p:gz (3.5) BS03 PEB N/A N/A N/A 29045394
    2197 5y6p:gz (3.5) BS04 PEB N/A N/A N/A 29045394
    2198 5y6p:gz (3.5) BS05 PEB N/A N/A N/A 29045394
    2199 5y6p:gz (3.5) BS06 PEB N/A N/A N/A 29045394
    2200 5y6p:gz (3.5) BS07 PEB N/A N/A N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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